miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 3' -68.1 NC_001650.1 + 142410 0.66 0.420725
Target:  5'- aGGGGGGUcucuacgGGCCCgaGGgcaucauGGCCGUGg -3'
miRNA:   3'- gCCCCCCGa------CUGGGggCC-------CCGGCACg -5'
3596 3' -68.1 NC_001650.1 + 129665 0.67 0.412803
Target:  5'- aGGGaGGGCUccacccuguccucGACCcuCCCGGGGCa--GCu -3'
miRNA:   3'- gCCC-CCCGA-------------CUGG--GGGCCCCGgcaCG- -5'
3596 3' -68.1 NC_001650.1 + 183644 0.67 0.41123
Target:  5'- gGGGGcucccuaccaauauGGCUGACCCCCucaugcgcacagGGGGCUu--- -3'
miRNA:   3'- gCCCC--------------CCGACUGGGGG------------CCCCGGcacg -5'
3596 3' -68.1 NC_001650.1 + 169844 0.67 0.408877
Target:  5'- gGGaGGGGCUGcuccauuaauggacaGCCCCCcuGGGCCa--- -3'
miRNA:   3'- gCC-CCCCGAC---------------UGGGGGc-CCCGGcacg -5'
3596 3' -68.1 NC_001650.1 + 3137 0.67 0.408877
Target:  5'- gGGaGGGGCUGcuccauuaauggacaGCCCCCcuGGGCCa--- -3'
miRNA:   3'- gCC-CCCCGAC---------------UGGGGGc-CCCGGcacg -5'
3596 3' -68.1 NC_001650.1 + 109804 0.67 0.405753
Target:  5'- uGGGGGGCUuccucggaGACCCCCucccGGGCg---- -3'
miRNA:   3'- gCCCCCCGA--------CUGGGGGc---CCCGgcacg -5'
3596 3' -68.1 NC_001650.1 + 169475 0.67 0.405753
Target:  5'- gGGucauGGGGgaGugCCCauaaaGGGCUGUGCg -3'
miRNA:   3'- gCC----CCCCgaCugGGGgc---CCCGGCACG- -5'
3596 3' -68.1 NC_001650.1 + 2768 0.67 0.405753
Target:  5'- gGGucauGGGGgaGugCCCauaaaGGGCUGUGCg -3'
miRNA:   3'- gCC----CCCCgaCugGGGgc---CCCGGCACG- -5'
3596 3' -68.1 NC_001650.1 + 183755 0.67 0.393408
Target:  5'- aGGGGGcuuccuaccaauaugGCUGACCCCCucuuaugcacaGGGGCUu--- -3'
miRNA:   3'- gCCCCC---------------CGACUGGGGG-----------CCCCGGcacg -5'
3596 3' -68.1 NC_001650.1 + 17048 0.67 0.393408
Target:  5'- aGGGGGcuuccuaccaauaugGCUGACCCCCucuuaugcacaGGGGCUu--- -3'
miRNA:   3'- gCCCCC---------------CGACUGGGGG-----------CCCCGGcacg -5'
3596 3' -68.1 NC_001650.1 + 133223 0.67 0.392645
Target:  5'- gCGuGGGGGCUGggagcggGCCgCCCgagaaaaaacaacagGGGGCCGcagagGCc -3'
miRNA:   3'- -GC-CCCCCGAC-------UGG-GGG---------------CCCCGGCa----CG- -5'
3596 3' -68.1 NC_001650.1 + 159017 0.67 0.39036
Target:  5'- gCGGGGGacCUGACCCUCcucaGGGGCaggaGCg -3'
miRNA:   3'- -GCCCCCc-GACUGGGGG----CCCCGgca-CG- -5'
3596 3' -68.1 NC_001650.1 + 136812 0.67 0.39036
Target:  5'- cCGGGcgguGGGCUGGgUuugucuucgggCCUGGGGCUgGUGCg -3'
miRNA:   3'- -GCCC----CCCGACUgG-----------GGGCCCCGG-CACG- -5'
3596 3' -68.1 NC_001650.1 + 165745 0.67 0.39036
Target:  5'- cCGGGGcGGCUcuuaGGCCUaggGGGGCCuGUGg -3'
miRNA:   3'- -GCCCC-CCGA----CUGGGgg-CCCCGG-CACg -5'
3596 3' -68.1 NC_001650.1 + 158664 0.67 0.378324
Target:  5'- aCGGGGGuccagguggcuaacCUGACCUCgGGGGCCa--- -3'
miRNA:   3'- -GCCCCCc-------------GACUGGGGgCCCCGGcacg -5'
3596 3' -68.1 NC_001650.1 + 46601 0.67 0.375355
Target:  5'- aGGGGGccgccgcgGCgcaucugGugCCCCGcGGCCGaUGCg -3'
miRNA:   3'- gCCCCC--------CGa------CugGGGGCcCCGGC-ACG- -5'
3596 3' -68.1 NC_001650.1 + 61349 0.67 0.375355
Target:  5'- gGGGGcGGCggGGgaCCCGGGGgCG-GCg -3'
miRNA:   3'- gCCCC-CCGa-CUggGGGCCCCgGCaCG- -5'
3596 3' -68.1 NC_001650.1 + 110948 0.67 0.375355
Target:  5'- -cGGGGGC-GGCUgCUGGGGCUGcugagGCu -3'
miRNA:   3'- gcCCCCCGaCUGGgGGCCCCGGCa----CG- -5'
3596 3' -68.1 NC_001650.1 + 75108 0.67 0.374615
Target:  5'- cCGGGGGcGC-GACCCCCGcGaagauguucagcaGCuCGUGCu -3'
miRNA:   3'- -GCCCCC-CGaCUGGGGGCcC-------------CG-GCACG- -5'
3596 3' -68.1 NC_001650.1 + 68761 0.67 0.367999
Target:  5'- cCGGGGGGCguacuuGCCCCUguugagcaGGGaGaCCaGUGCg -3'
miRNA:   3'- -GCCCCCCGac----UGGGGG--------CCC-C-GG-CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.