Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3596 | 5' | -51.6 | NC_001650.1 | + | 122466 | 0.67 | 0.992089 |
Target: 5'- cGGGUACGUGGAcGUGCc----CGUGCc -3' miRNA: 3'- -CCCGUGCAUCUuCAUGugucaGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 57533 | 0.67 | 0.988308 |
Target: 5'- aGGCGgGUGGggGUGC-CAccgGCGCu -3' miRNA: 3'- cCCGUgCAUCuuCAUGuGUcagCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 143051 | 0.67 | 0.992089 |
Target: 5'- cGGGcCACGcGGAGG-GCGCcGagGCGCu -3' miRNA: 3'- -CCC-GUGCaUCUUCaUGUGuCagCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 56269 | 0.67 | 0.99251 |
Target: 5'- gGGGUugGgcGAAGgACGgGGgggguggugccuggCGCGCg -3' miRNA: 3'- -CCCGugCauCUUCaUGUgUCa-------------GCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 118957 | 0.67 | 0.988308 |
Target: 5'- gGGGgGCGgcGAGGggGCGguGUacgagaGCGCg -3' miRNA: 3'- -CCCgUGCauCUUCa-UGUguCAg-----CGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 2353 | 0.67 | 0.991872 |
Target: 5'- gGGGCAgGguuagagagauGAGGUAgGCAGUUGC-Ca -3' miRNA: 3'- -CCCGUgCau---------CUUCAUgUGUCAGCGcG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 69131 | 0.67 | 0.988308 |
Target: 5'- gGGGCgGCGUAGAgcgcuGGUACGuguacCcGcCGCGCa -3' miRNA: 3'- -CCCG-UGCAUCU-----UCAUGU-----GuCaGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 81594 | 0.67 | 0.986777 |
Target: 5'- cGGGguCGcccgacgcGAGGUcgccGCACAGggCGCGCg -3' miRNA: 3'- -CCCguGCau------CUUCA----UGUGUCa-GCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 28455 | 0.67 | 0.986777 |
Target: 5'- cGGGCACc---GAGUACAaGGUgGUGCa -3' miRNA: 3'- -CCCGUGcaucUUCAUGUgUCAgCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 155772 | 0.67 | 0.990956 |
Target: 5'- gGGGCugGUGGccGAGcGCGCGGccagggagacCGUGCu -3' miRNA: 3'- -CCCGugCAUC--UUCaUGUGUCa---------GCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 169060 | 0.67 | 0.991872 |
Target: 5'- gGGGCAgGguuagagagauGAGGUAgGCAGUUGC-Ca -3' miRNA: 3'- -CCCGUgCau---------CUUCAUgUGUCAGCGcG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 157498 | 0.67 | 0.992089 |
Target: 5'- cGGGgGCGgGGAGGUGCcccCAG--GCGCa -3' miRNA: 3'- -CCCgUGCaUCUUCAUGu--GUCagCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 132258 | 0.67 | 0.992089 |
Target: 5'- cGGGgACGguguuGggGUACuCGGcCGCGg -3' miRNA: 3'- -CCCgUGCau---CuuCAUGuGUCaGCGCg -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 129279 | 0.67 | 0.992089 |
Target: 5'- cGGcCACGUccAGccugGCGgGGUCGCGCg -3' miRNA: 3'- cCC-GUGCA--UCuucaUGUgUCAGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 119117 | 0.67 | 0.992196 |
Target: 5'- -aGCugGagaaGGggGUGCACAGguuccugugggacaaCGCGCg -3' miRNA: 3'- ccCGugCa---UCuuCAUGUGUCa--------------GCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 72841 | 0.67 | 0.986777 |
Target: 5'- gGGGCAgGUgaGGAAGgaggugGC-CAG-CGUGCg -3' miRNA: 3'- -CCCGUgCA--UCUUCa-----UGuGUCaGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 61009 | 0.67 | 0.991762 |
Target: 5'- aGGGCcCGUAGAAGg--GCAGccacugggacugccUCGUGUa -3' miRNA: 3'- -CCCGuGCAUCUUCaugUGUC--------------AGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 157979 | 0.68 | 0.976708 |
Target: 5'- uGGGCGacuuuuugccCGUGGGAGgGC-CGGaCGCGCc -3' miRNA: 3'- -CCCGU----------GCAUCUUCaUGuGUCaGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 128452 | 0.68 | 0.976708 |
Target: 5'- cGGGCcCGUAGGc--GCGCAGg-GCGCc -3' miRNA: 3'- -CCCGuGCAUCUucaUGUGUCagCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 88311 | 0.68 | 0.983257 |
Target: 5'- gGGGCGCGgcggGGAGGUguucguguucgAgGCGGaCGCGg -3' miRNA: 3'- -CCCGUGCa---UCUUCA-----------UgUGUCaGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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