miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 88987 0.68 0.981041
Target:  5'- cGGGCcUGaAGAGGUccgugauGCGCAGgCGCGUc -3'
miRNA:   3'- -CCCGuGCaUCUUCA-------UGUGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 64705 0.68 0.976708
Target:  5'- uGGGuCGCGUGcuGggGUcugagaACAUAGUUGaCGCu -3'
miRNA:   3'- -CCC-GUGCAU--CuuCA------UGUGUCAGC-GCG- -5'
3596 5' -51.6 NC_001650.1 + 128452 0.68 0.976708
Target:  5'- cGGGCcCGUAGGc--GCGCAGg-GCGCc -3'
miRNA:   3'- -CCCGuGCAUCUucaUGUGUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 148494 0.68 0.974155
Target:  5'- uGGGCAUcgGGggGUACuuuaaAGagGCGCu -3'
miRNA:   3'- -CCCGUGcaUCuuCAUGug---UCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 67256 0.68 0.985096
Target:  5'- cGGCcgcuCGUAGcAGUACAgGGggaUCGCGUu -3'
miRNA:   3'- cCCGu---GCAUCuUCAUGUgUC---AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 88311 0.68 0.983257
Target:  5'- gGGGCGCGgcggGGAGGUguucguguucgAgGCGGaCGCGg -3'
miRNA:   3'- -CCCGUGCa---UCUUCA-----------UgUGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 164727 0.68 0.978843
Target:  5'- aGGGCcgccugaGCGaGGAGGggga-GGUCGCGCg -3'
miRNA:   3'- -CCCG-------UGCaUCUUCaugugUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 58707 0.69 0.965283
Target:  5'- uGGGCcag-AGGAGggGCACGGUCGCu- -3'
miRNA:   3'- -CCCGugcaUCUUCa-UGUGUCAGCGcg -5'
3596 5' -51.6 NC_001650.1 + 88680 0.69 0.971404
Target:  5'- aGGGgAUGgAGGAGUAgGCGG-CGCGg -3'
miRNA:   3'- -CCCgUGCaUCUUCAUgUGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 72206 0.69 0.971404
Target:  5'- aGGCACGccGAGGUGCACG--UGgGCa -3'
miRNA:   3'- cCCGUGCauCUUCAUGUGUcaGCgCG- -5'
3596 5' -51.6 NC_001650.1 + 148039 0.69 0.968449
Target:  5'- aGGGCGCgGUGGAGcgGCGC-GUCuaGCGCc -3'
miRNA:   3'- -CCCGUG-CAUCUUcaUGUGuCAG--CGCG- -5'
3596 5' -51.6 NC_001650.1 + 100516 0.69 0.971404
Target:  5'- gGGGaUAUGUgcgGGGAGUagcGCGCGGUCuCGCg -3'
miRNA:   3'- -CCC-GUGCA---UCUUCA---UGUGUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 124346 0.69 0.958296
Target:  5'- cGGGCGCGacccccgaaAGAacAGUAuCGCcgggGGUCGCGCc -3'
miRNA:   3'- -CCCGUGCa--------UCU--UCAU-GUG----UCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 181882 0.69 0.958296
Target:  5'- cGGGCGCGgcgcGggGUGuCugGggGUCGCGg -3'
miRNA:   3'- -CCCGUGCau--CuuCAU-GugU--CAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 15175 0.69 0.958296
Target:  5'- cGGGCGCGgcgcGggGUGuCugGggGUCGCGg -3'
miRNA:   3'- -CCCGUGCau--CuuCAU-GugU--CAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 129956 0.69 0.958296
Target:  5'- cGGGCACGccccUGGAGGcGC-CcGUgGCGCg -3'
miRNA:   3'- -CCCGUGC----AUCUUCaUGuGuCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 24354 0.69 0.961901
Target:  5'- gGGGagGCGUGGAGGUcccACuCGGU-GCGCa -3'
miRNA:   3'- -CCCg-UGCAUCUUCA---UGuGUCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 121540 0.69 0.968449
Target:  5'- cGGGUgaggccgcacGCGUGGAAG---GCGG-CGCGCa -3'
miRNA:   3'- -CCCG----------UGCAUCUUCaugUGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 131683 0.7 0.954465
Target:  5'- gGGGCG-GUGGAGGUGCuCAGgacCGUGg -3'
miRNA:   3'- -CCCGUgCAUCUUCAUGuGUCa--GCGCg -5'
3596 5' -51.6 NC_001650.1 + 124142 0.7 0.950402
Target:  5'- uGGGCcccACGUAGGAG-ACGaGGUCGUccGCg -3'
miRNA:   3'- -CCCG---UGCAUCUUCaUGUgUCAGCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.