miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 100516 0.69 0.971404
Target:  5'- gGGGaUAUGUgcgGGGAGUagcGCGCGGUCuCGCg -3'
miRNA:   3'- -CCC-GUGCA---UCUUCA---UGUGUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 121540 0.69 0.968449
Target:  5'- cGGGUgaggccgcacGCGUGGAAG---GCGG-CGCGCa -3'
miRNA:   3'- -CCCG----------UGCAUCUUCaugUGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 58707 0.69 0.965283
Target:  5'- uGGGCcag-AGGAGggGCACGGUCGCu- -3'
miRNA:   3'- -CCCGugcaUCUUCa-UGUGUCAGCGcg -5'
3596 5' -51.6 NC_001650.1 + 24354 0.69 0.961901
Target:  5'- gGGGagGCGUGGAGGUcccACuCGGU-GCGCa -3'
miRNA:   3'- -CCCg-UGCAUCUUCA---UGuGUCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 128452 0.68 0.976708
Target:  5'- cGGGCcCGUAGGc--GCGCAGg-GCGCc -3'
miRNA:   3'- -CCCGuGCAUCUucaUGUGUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 164727 0.68 0.978843
Target:  5'- aGGGCcgccugaGCGaGGAGGggga-GGUCGCGCg -3'
miRNA:   3'- -CCCG-------UGCaUCUUCaugugUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 31161 0.68 0.976708
Target:  5'- uGGcCAUGUGGGAGgaGgAC-GUCGCGCg -3'
miRNA:   3'- cCC-GUGCAUCUUCa-UgUGuCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 67256 0.68 0.985096
Target:  5'- cGGCcgcuCGUAGcAGUACAgGGggaUCGCGUu -3'
miRNA:   3'- cCCGu---GCAUCuUCAUGUgUC---AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 88311 0.68 0.983257
Target:  5'- gGGGCGCGgcggGGAGGUguucguguucgAgGCGGaCGCGg -3'
miRNA:   3'- -CCCGUGCa---UCUUCA-----------UgUGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 148494 0.68 0.974155
Target:  5'- uGGGCAUcgGGggGUACuuuaaAGagGCGCu -3'
miRNA:   3'- -CCCGUGcaUCuuCAUGug---UCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 157979 0.68 0.976708
Target:  5'- uGGGCGacuuuuugccCGUGGGAGgGC-CGGaCGCGCc -3'
miRNA:   3'- -CCCGU----------GCAUCUUCaUGuGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 64705 0.68 0.976708
Target:  5'- uGGGuCGCGUGcuGggGUcugagaACAUAGUUGaCGCu -3'
miRNA:   3'- -CCC-GUGCAU--CuuCA------UGUGUCAGC-GCG- -5'
3596 5' -51.6 NC_001650.1 + 88987 0.68 0.981041
Target:  5'- cGGGCcUGaAGAGGUccgugauGCGCAGgCGCGUc -3'
miRNA:   3'- -CCCGuGCaUCUUCA-------UGUGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 55063 0.68 0.981251
Target:  5'- aGGUACuaaaucccaGUGGggGUGCAgaaccCAGUaccCGCGCg -3'
miRNA:   3'- cCCGUG---------CAUCuuCAUGU-----GUCA---GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 61009 0.67 0.991762
Target:  5'- aGGGCcCGUAGAAGg--GCAGccacugggacugccUCGUGUa -3'
miRNA:   3'- -CCCGuGCAUCUUCaugUGUC--------------AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 28455 0.67 0.986777
Target:  5'- cGGGCACc---GAGUACAaGGUgGUGCa -3'
miRNA:   3'- -CCCGUGcaucUUCAUGUgUCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 81594 0.67 0.986777
Target:  5'- cGGGguCGcccgacgcGAGGUcgccGCACAGggCGCGCg -3'
miRNA:   3'- -CCCguGCau------CUUCA----UGUGUCa-GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 93051 0.67 0.990956
Target:  5'- cGGGCACGgcGggGgcggguaagaGCACuAGUaucucgGCGCu -3'
miRNA:   3'- -CCCGUGCauCuuCa---------UGUG-UCAg-----CGCG- -5'
3596 5' -51.6 NC_001650.1 + 122466 0.67 0.992089
Target:  5'- cGGGUACGUGGAcGUGCc----CGUGCc -3'
miRNA:   3'- -CCCGUGCAUCUuCAUGugucaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 56269 0.67 0.99251
Target:  5'- gGGGUugGgcGAAGgACGgGGgggguggugccuggCGCGCg -3'
miRNA:   3'- -CCCGugCauCUUCaUGUgUCa-------------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.