Results 61 - 80 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
3596 | 5' | -51.6 | NC_001650.1 | + | 118957 | 0.67 | 0.988308 |
Target: 5'- gGGGgGCGgcGAGGggGCGguGUacgagaGCGCg -3' miRNA: 3'- -CCCgUGCauCUUCa-UGUguCAg-----CGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 72841 | 0.67 | 0.986777 |
Target: 5'- gGGGCAgGUgaGGAAGgaggugGC-CAG-CGUGCg -3' miRNA: 3'- -CCCGUgCA--UCUUCa-----UGuGUCaGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 2353 | 0.67 | 0.991872 |
Target: 5'- gGGGCAgGguuagagagauGAGGUAgGCAGUUGC-Ca -3' miRNA: 3'- -CCCGUgCau---------CUUCAUgUGUCAGCGcG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 119117 | 0.67 | 0.992196 |
Target: 5'- -aGCugGagaaGGggGUGCACAGguuccugugggacaaCGCGCg -3' miRNA: 3'- ccCGugCa---UCuuCAUGUGUCa--------------GCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 132258 | 0.67 | 0.992089 |
Target: 5'- cGGGgACGguguuGggGUACuCGGcCGCGg -3' miRNA: 3'- -CCCgUGCau---CuuCAUGuGUCaGCGCg -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 56269 | 0.67 | 0.99251 |
Target: 5'- gGGGUugGgcGAAGgACGgGGgggguggugccuggCGCGCg -3' miRNA: 3'- -CCCGugCauCUUCaUGUgUCa-------------GCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 61009 | 0.67 | 0.991762 |
Target: 5'- aGGGCcCGUAGAAGg--GCAGccacugggacugccUCGUGUa -3' miRNA: 3'- -CCCGuGCAUCUUCaugUGUC--------------AGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 28455 | 0.67 | 0.986777 |
Target: 5'- cGGGCACc---GAGUACAaGGUgGUGCa -3' miRNA: 3'- -CCCGUGcaucUUCAUGUgUCAgCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 81594 | 0.67 | 0.986777 |
Target: 5'- cGGGguCGcccgacgcGAGGUcgccGCACAGggCGCGCg -3' miRNA: 3'- -CCCguGCau------CUUCA----UGUGUCa-GCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 93051 | 0.67 | 0.990956 |
Target: 5'- cGGGCACGgcGggGgcggguaagaGCACuAGUaucucgGCGCu -3' miRNA: 3'- -CCCGUGCauCuuCa---------UGUG-UCAg-----CGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 122466 | 0.67 | 0.992089 |
Target: 5'- cGGGUACGUGGAcGUGCc----CGUGCc -3' miRNA: 3'- -CCCGUGCAUCUuCAUGugucaGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 143051 | 0.67 | 0.992089 |
Target: 5'- cGGGcCACGcGGAGG-GCGCcGagGCGCu -3' miRNA: 3'- -CCC-GUGCaUCUUCaUGUGuCagCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 168643 | 0.66 | 0.992912 |
Target: 5'- uGGGUugGgucagggggauGAGGUAgGCGGUUGCcagGCa -3' miRNA: 3'- -CCCGugCau---------CUUCAUgUGUCAGCG---CG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 78111 | 0.66 | 0.996183 |
Target: 5'- cGGGgGCGac-GAGUGCAUAGUgGUGa -3' miRNA: 3'- -CCCgUGCaucUUCAUGUGUCAgCGCg -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 38133 | 0.66 | 0.996183 |
Target: 5'- cGGC-CGgggGGAuguuGUGCugGGcCGCGUa -3' miRNA: 3'- cCCGuGCa--UCUu---CAUGugUCaGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 40390 | 0.66 | 0.994017 |
Target: 5'- gGGGCGCGaGGGcgAGUcaccaGCGgGGUCaCGCg -3' miRNA: 3'- -CCCGUGCaUCU--UCA-----UGUgUCAGcGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 48009 | 0.66 | 0.994017 |
Target: 5'- gGGGC-CGcucAAGUGCAUAGUCacugagaaccugGCGCu -3' miRNA: 3'- -CCCGuGCaucUUCAUGUGUCAG------------CGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 22371 | 0.66 | 0.994828 |
Target: 5'- uGGGCAgCGgGGAGG-ACcCGuUCGCGCu -3' miRNA: 3'- -CCCGU-GCaUCUUCaUGuGUcAGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 155185 | 0.66 | 0.996123 |
Target: 5'- aGGGCgaucaugcccaggGCGUccaGGGAGUACucCAGcccgucCGCGCg -3' miRNA: 3'- -CCCG-------------UGCA---UCUUCAUGu-GUCa-----GCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 24183 | 0.66 | 0.996183 |
Target: 5'- gGGGuCGCGcUGGAGGUGcCGCuGUCcucCGCc -3' miRNA: 3'- -CCC-GUGC-AUCUUCAU-GUGuCAGc--GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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