miRNA display CGI


Results 41 - 60 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 148039 0.69 0.968449
Target:  5'- aGGGCGCgGUGGAGcgGCGC-GUCuaGCGCc -3'
miRNA:   3'- -CCCGUG-CAUCUUcaUGUGuCAG--CGCG- -5'
3596 5' -51.6 NC_001650.1 + 88680 0.69 0.971404
Target:  5'- aGGGgAUGgAGGAGUAgGCGG-CGCGg -3'
miRNA:   3'- -CCCgUGCaUCUUCAUgUGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 100516 0.69 0.971404
Target:  5'- gGGGaUAUGUgcgGGGAGUagcGCGCGGUCuCGCg -3'
miRNA:   3'- -CCC-GUGCA---UCUUCA---UGUGUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 72206 0.69 0.971404
Target:  5'- aGGCACGccGAGGUGCACG--UGgGCa -3'
miRNA:   3'- cCCGUGCauCUUCAUGUGUcaGCgCG- -5'
3596 5' -51.6 NC_001650.1 + 148494 0.68 0.974155
Target:  5'- uGGGCAUcgGGggGUACuuuaaAGagGCGCu -3'
miRNA:   3'- -CCCGUGcaUCuuCAUGug---UCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 31161 0.68 0.976708
Target:  5'- uGGcCAUGUGGGAGgaGgAC-GUCGCGCg -3'
miRNA:   3'- cCC-GUGCAUCUUCa-UgUGuCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 64705 0.68 0.976708
Target:  5'- uGGGuCGCGUGcuGggGUcugagaACAUAGUUGaCGCu -3'
miRNA:   3'- -CCC-GUGCAU--CuuCA------UGUGUCAGC-GCG- -5'
3596 5' -51.6 NC_001650.1 + 157979 0.68 0.976708
Target:  5'- uGGGCGacuuuuugccCGUGGGAGgGC-CGGaCGCGCc -3'
miRNA:   3'- -CCCGU----------GCAUCUUCaUGuGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 128452 0.68 0.976708
Target:  5'- cGGGCcCGUAGGc--GCGCAGg-GCGCc -3'
miRNA:   3'- -CCCGuGCAUCUucaUGUGUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 164727 0.68 0.978843
Target:  5'- aGGGCcgccugaGCGaGGAGGggga-GGUCGCGCg -3'
miRNA:   3'- -CCCG-------UGCaUCUUCaugugUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 88987 0.68 0.981041
Target:  5'- cGGGCcUGaAGAGGUccgugauGCGCAGgCGCGUc -3'
miRNA:   3'- -CCCGuGCaUCUUCA-------UGUGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 55063 0.68 0.981251
Target:  5'- aGGUACuaaaucccaGUGGggGUGCAgaaccCAGUaccCGCGCg -3'
miRNA:   3'- cCCGUG---------CAUCuuCAUGU-----GUCA---GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 88311 0.68 0.983257
Target:  5'- gGGGCGCGgcggGGAGGUguucguguucgAgGCGGaCGCGg -3'
miRNA:   3'- -CCCGUGCa---UCUUCA-----------UgUGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 67256 0.68 0.985096
Target:  5'- cGGCcgcuCGUAGcAGUACAgGGggaUCGCGUu -3'
miRNA:   3'- cCCGu---GCAUCuUCAUGUgUC---AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 72841 0.67 0.986777
Target:  5'- gGGGCAgGUgaGGAAGgaggugGC-CAG-CGUGCg -3'
miRNA:   3'- -CCCGUgCA--UCUUCa-----UGuGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 81594 0.67 0.986777
Target:  5'- cGGGguCGcccgacgcGAGGUcgccGCACAGggCGCGCg -3'
miRNA:   3'- -CCCguGCau------CUUCA----UGUGUCa-GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 28455 0.67 0.986777
Target:  5'- cGGGCACc---GAGUACAaGGUgGUGCa -3'
miRNA:   3'- -CCCGUGcaucUUCAUGUgUCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 118957 0.67 0.988308
Target:  5'- gGGGgGCGgcGAGGggGCGguGUacgagaGCGCg -3'
miRNA:   3'- -CCCgUGCauCUUCa-UGUguCAg-----CGCG- -5'
3596 5' -51.6 NC_001650.1 + 69131 0.67 0.988308
Target:  5'- gGGGCgGCGUAGAgcgcuGGUACGuguacCcGcCGCGCa -3'
miRNA:   3'- -CCCG-UGCAUCU-----UCAUGU-----GuCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 57533 0.67 0.988308
Target:  5'- aGGCGgGUGGggGUGC-CAccgGCGCu -3'
miRNA:   3'- cCCGUgCAUCuuCAUGuGUcagCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.