miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 123951 0.72 0.88295
Target:  5'- gGGGCccACGgggguGGAGUACACGGggGCGUu -3'
miRNA:   3'- -CCCG--UGCau---CUUCAUGUGUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 124142 0.7 0.950402
Target:  5'- uGGGCcccACGUAGGAG-ACGaGGUCGUccGCg -3'
miRNA:   3'- -CCCG---UGCAUCUUCaUGUgUCAGCG--CG- -5'
3596 5' -51.6 NC_001650.1 + 124346 0.69 0.958296
Target:  5'- cGGGCGCGacccccgaaAGAacAGUAuCGCcgggGGUCGCGCc -3'
miRNA:   3'- -CCCGUGCa--------UCU--UCAU-GUG----UCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 128452 0.68 0.976708
Target:  5'- cGGGCcCGUAGGc--GCGCAGg-GCGCc -3'
miRNA:   3'- -CCCGuGCAUCUucaUGUGUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 129279 0.67 0.992089
Target:  5'- cGGcCACGUccAGccugGCGgGGUCGCGCg -3'
miRNA:   3'- cCC-GUGCA--UCuucaUGUgUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 129324 0.75 0.735905
Target:  5'- cGGGCGCGgGGGAGUGuCuCAGgaaGCGCg -3'
miRNA:   3'- -CCCGUGCaUCUUCAU-GuGUCag-CGCG- -5'
3596 5' -51.6 NC_001650.1 + 129956 0.69 0.958296
Target:  5'- cGGGCACGccccUGGAGGcGC-CcGUgGCGCg -3'
miRNA:   3'- -CCCGUGC----AUCUUCaUGuGuCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 130577 0.66 0.993107
Target:  5'- gGGGC-CGUGGAgcuccacgAGUugG-AGUgCGCGCc -3'
miRNA:   3'- -CCCGuGCAUCU--------UCAugUgUCA-GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 131683 0.7 0.954465
Target:  5'- gGGGCG-GUGGAGGUGCuCAGgacCGUGg -3'
miRNA:   3'- -CCCGUgCAUCUUCAUGuGUCa--GCGCg -5'
3596 5' -51.6 NC_001650.1 + 132258 0.67 0.992089
Target:  5'- cGGGgACGguguuGggGUACuCGGcCGCGg -3'
miRNA:   3'- -CCCgUGCau---CuuCAUGuGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 132755 0.66 0.993107
Target:  5'- gGGGCGCGUcgcccGGggG-GCGCGcGUUGCcCa -3'
miRNA:   3'- -CCCGUGCA-----UCuuCaUGUGU-CAGCGcG- -5'
3596 5' -51.6 NC_001650.1 + 132880 0.71 0.931774
Target:  5'- aGGCGCGagcgGGAGGUgguggAgGCGGUgGCGCc -3'
miRNA:   3'- cCCGUGCa---UCUUCA-----UgUGUCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 136263 0.66 0.994017
Target:  5'- gGGGCugG-GGGAGUACucuCuGccccUCGUGCg -3'
miRNA:   3'- -CCCGugCaUCUUCAUGu--GuC----AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 136323 0.71 0.931259
Target:  5'- uGGCACGUgaGGAGGUagguggcgaagcaGgACAGgucCGCGCa -3'
miRNA:   3'- cCCGUGCA--UCUUCA-------------UgUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 142337 0.74 0.811088
Target:  5'- cGGCugGaAGGAGUGCucCAGgagcCGCGCg -3'
miRNA:   3'- cCCGugCaUCUUCAUGu-GUCa---GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 143051 0.67 0.992089
Target:  5'- cGGGcCACGcGGAGG-GCGCcGagGCGCu -3'
miRNA:   3'- -CCC-GUGCaUCUUCaUGUGuCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 148039 0.69 0.968449
Target:  5'- aGGGCGCgGUGGAGcgGCGC-GUCuaGCGCc -3'
miRNA:   3'- -CCCGUG-CAUCUUcaUGUGuCAG--CGCG- -5'
3596 5' -51.6 NC_001650.1 + 148494 0.68 0.974155
Target:  5'- uGGGCAUcgGGggGUACuuuaaAGagGCGCu -3'
miRNA:   3'- -CCCGUGcaUCuuCAUGug---UCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 154516 0.7 0.946104
Target:  5'- uGGGCAUGUAGuaccuGGgGCACgAGUCugGCGUc -3'
miRNA:   3'- -CCCGUGCAUCu----UCaUGUG-UCAG--CGCG- -5'
3596 5' -51.6 NC_001650.1 + 155185 0.66 0.996123
Target:  5'- aGGGCgaucaugcccaggGCGUccaGGGAGUACucCAGcccgucCGCGCg -3'
miRNA:   3'- -CCCG-------------UGCA---UCUUCAUGu-GUCa-----GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.