miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 132755 0.66 0.993107
Target:  5'- gGGGCGCGUcgcccGGggG-GCGCGcGUUGCcCa -3'
miRNA:   3'- -CCCGUGCA-----UCuuCaUGUGU-CAGCGcG- -5'
3596 5' -51.6 NC_001650.1 + 132258 0.67 0.992089
Target:  5'- cGGGgACGguguuGggGUACuCGGcCGCGg -3'
miRNA:   3'- -CCCgUGCau---CuuCAUGuGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 131683 0.7 0.954465
Target:  5'- gGGGCG-GUGGAGGUGCuCAGgacCGUGg -3'
miRNA:   3'- -CCCGUgCAUCUUCAUGuGUCa--GCGCg -5'
3596 5' -51.6 NC_001650.1 + 130577 0.66 0.993107
Target:  5'- gGGGC-CGUGGAgcuccacgAGUugG-AGUgCGCGCc -3'
miRNA:   3'- -CCCGuGCAUCU--------UCAugUgUCA-GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 129956 0.69 0.958296
Target:  5'- cGGGCACGccccUGGAGGcGC-CcGUgGCGCg -3'
miRNA:   3'- -CCCGUGC----AUCUUCaUGuGuCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 129324 0.75 0.735905
Target:  5'- cGGGCGCGgGGGAGUGuCuCAGgaaGCGCg -3'
miRNA:   3'- -CCCGUGCaUCUUCAU-GuGUCag-CGCG- -5'
3596 5' -51.6 NC_001650.1 + 129279 0.67 0.992089
Target:  5'- cGGcCACGUccAGccugGCGgGGUCGCGCg -3'
miRNA:   3'- cCC-GUGCA--UCuucaUGUgUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 128452 0.68 0.976708
Target:  5'- cGGGCcCGUAGGc--GCGCAGg-GCGCc -3'
miRNA:   3'- -CCCGuGCAUCUucaUGUGUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 124346 0.69 0.958296
Target:  5'- cGGGCGCGacccccgaaAGAacAGUAuCGCcgggGGUCGCGCc -3'
miRNA:   3'- -CCCGUGCa--------UCU--UCAU-GUG----UCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 124142 0.7 0.950402
Target:  5'- uGGGCcccACGUAGGAG-ACGaGGUCGUccGCg -3'
miRNA:   3'- -CCCG---UGCAUCUUCaUGUgUCAGCG--CG- -5'
3596 5' -51.6 NC_001650.1 + 123951 0.72 0.88295
Target:  5'- gGGGCccACGgggguGGAGUACACGGggGCGUu -3'
miRNA:   3'- -CCCG--UGCau---CUUCAUGUGUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 122466 0.67 0.992089
Target:  5'- cGGGUACGUGGAcGUGCc----CGUGCc -3'
miRNA:   3'- -CCCGUGCAUCUuCAUGugucaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 121540 0.69 0.968449
Target:  5'- cGGGUgaggccgcacGCGUGGAAG---GCGG-CGCGCa -3'
miRNA:   3'- -CCCG----------UGCAUCUUCaugUGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 119117 0.67 0.992196
Target:  5'- -aGCugGagaaGGggGUGCACAGguuccugugggacaaCGCGCg -3'
miRNA:   3'- ccCGugCa---UCuuCAUGUGUCa--------------GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 118957 0.67 0.988308
Target:  5'- gGGGgGCGgcGAGGggGCGguGUacgagaGCGCg -3'
miRNA:   3'- -CCCgUGCauCUUCa-UGUguCAg-----CGCG- -5'
3596 5' -51.6 NC_001650.1 + 118047 0.71 0.908662
Target:  5'- cGGGCAgGcUGGAcgAGUACAgcccguggcgcacCAGcCGCGCg -3'
miRNA:   3'- -CCCGUgC-AUCU--UCAUGU-------------GUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 109117 0.66 0.996123
Target:  5'- aGGCcagcuccGCGUAGuGG-ACGCAGgcggugaggCGCGCg -3'
miRNA:   3'- cCCG-------UGCAUCuUCaUGUGUCa--------GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 107679 0.71 0.925432
Target:  5'- gGGGCGCGgAGAAGUGCcugccuguuauuCAGUUuagGUGCg -3'
miRNA:   3'- -CCCGUGCaUCUUCAUGu-----------GUCAG---CGCG- -5'
3596 5' -51.6 NC_001650.1 + 105906 0.66 0.995126
Target:  5'- aGGCACGUAGGgccgcaccaggauagGGUACAgguUGGUgaGCGUg -3'
miRNA:   3'- cCCGUGCAUCU---------------UCAUGU---GUCAg-CGCG- -5'
3596 5' -51.6 NC_001650.1 + 102822 0.7 0.936792
Target:  5'- uGGGCugGacugGGggGUGaGCuGUCGCuGCu -3'
miRNA:   3'- -CCCGugCa---UCuuCAUgUGuCAGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.