miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 101173 0.66 0.994017
Target:  5'- aGGCACucgugGUAGAGGgugauCAGUCGCa- -3'
miRNA:   3'- cCCGUG-----CAUCUUCaugu-GUCAGCGcg -5'
3596 5' -51.6 NC_001650.1 + 100516 0.69 0.971404
Target:  5'- gGGGaUAUGUgcgGGGAGUagcGCGCGGUCuCGCg -3'
miRNA:   3'- -CCC-GUGCA---UCUUCA---UGUGUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 94499 0.66 0.995548
Target:  5'- cGGGCugguCGUGGGAGUGgGCgucuaugaaGGUCuCGUu -3'
miRNA:   3'- -CCCGu---GCAUCUUCAUgUG---------UCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 94168 0.73 0.840109
Target:  5'- gGGGCAgGU-GAAGaGCcuggcgucggccucgGCGGUCGCGCc -3'
miRNA:   3'- -CCCGUgCAuCUUCaUG---------------UGUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 93051 0.67 0.990956
Target:  5'- cGGGCACGgcGggGgcggguaagaGCACuAGUaucucgGCGCu -3'
miRNA:   3'- -CCCGUGCauCuuCa---------UGUG-UCAg-----CGCG- -5'
3596 5' -51.6 NC_001650.1 + 89159 0.7 0.950402
Target:  5'- aGGGC-CGgcgGGAGGcccuCGaAGUCGCGCg -3'
miRNA:   3'- -CCCGuGCa--UCUUCau--GUgUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 88987 0.68 0.981041
Target:  5'- cGGGCcUGaAGAGGUccgugauGCGCAGgCGCGUc -3'
miRNA:   3'- -CCCGuGCaUCUUCA-------UGUGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 88798 0.71 0.919879
Target:  5'- aGGCcCGUGGAcugcgagcuggcGUGCGCGGgCGCGCg -3'
miRNA:   3'- cCCGuGCAUCUu-----------CAUGUGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 88680 0.69 0.971404
Target:  5'- aGGGgAUGgAGGAGUAgGCGG-CGCGg -3'
miRNA:   3'- -CCCgUGCaUCUUCAUgUGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 88311 0.68 0.983257
Target:  5'- gGGGCGCGgcggGGAGGUguucguguucgAgGCGGaCGCGg -3'
miRNA:   3'- -CCCGUGCa---UCUUCA-----------UgUGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 83240 0.73 0.853016
Target:  5'- -cGCGCGUcgAGAAGcucugcgACGCGGUCGCGg -3'
miRNA:   3'- ccCGUGCA--UCUUCa------UGUGUCAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 81594 0.67 0.986777
Target:  5'- cGGGguCGcccgacgcGAGGUcgccGCACAGggCGCGCg -3'
miRNA:   3'- -CCCguGCau------CUUCA----UGUGUCa-GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 80441 0.66 0.994017
Target:  5'- --uCACGUAGAAGgcgGCGCAcGUCcuGCGUc -3'
miRNA:   3'- cccGUGCAUCUUCa--UGUGU-CAG--CGCG- -5'
3596 5' -51.6 NC_001650.1 + 78111 0.66 0.996183
Target:  5'- cGGGgGCGac-GAGUGCAUAGUgGUGa -3'
miRNA:   3'- -CCCgUGCaucUUCAUGUGUCAgCGCg -5'
3596 5' -51.6 NC_001650.1 + 74249 0.77 0.634221
Target:  5'- aGGuGCugGUuGAAGUGCACGGgggCGUGUg -3'
miRNA:   3'- -CC-CGugCAuCUUCAUGUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 73203 0.74 0.802174
Target:  5'- aGGgGCGUGGggG--CGCAGgagCGCGCg -3'
miRNA:   3'- cCCgUGCAUCuuCauGUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 73013 0.8 0.512388
Target:  5'- aGGGCACGgGGAAGaACAUGGUCuCGCa -3'
miRNA:   3'- -CCCGUGCaUCUUCaUGUGUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 72841 0.67 0.986777
Target:  5'- gGGGCAgGUgaGGAAGgaggugGC-CAG-CGUGCg -3'
miRNA:   3'- -CCCGUgCA--UCUUCa-----UGuGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 72206 0.69 0.971404
Target:  5'- aGGCACGccGAGGUGCACG--UGgGCa -3'
miRNA:   3'- cCCGUGCauCUUCAUGUGUcaGCgCG- -5'
3596 5' -51.6 NC_001650.1 + 69131 0.67 0.988308
Target:  5'- gGGGCgGCGUAGAgcgcuGGUACGuguacCcGcCGCGCa -3'
miRNA:   3'- -CCCG-UGCAUCU-----UCAUGU-----GuCaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.