miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 68114 0.71 0.931774
Target:  5'- cGGGUugGUcaGGAuggGCGCGGUCuCGCu -3'
miRNA:   3'- -CCCGugCA--UCUucaUGUGUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 67256 0.68 0.985096
Target:  5'- cGGCcgcuCGUAGcAGUACAgGGggaUCGCGUu -3'
miRNA:   3'- cCCGu---GCAUCuUCAUGUgUC---AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 64705 0.68 0.976708
Target:  5'- uGGGuCGCGUGcuGggGUcugagaACAUAGUUGaCGCu -3'
miRNA:   3'- -CCC-GUGCAU--CuuCA------UGUGUCAGC-GCG- -5'
3596 5' -51.6 NC_001650.1 + 63137 0.7 0.936792
Target:  5'- gGGGCACGUgccagaccccaGGAAcGUguuaaACACaucucugggGGUCGCGCc -3'
miRNA:   3'- -CCCGUGCA-----------UCUU-CA-----UGUG---------UCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 61246 0.7 0.946104
Target:  5'- cGGcCACGUGGAGGgcgguggccUGCucCAGcCGCGCg -3'
miRNA:   3'- cCC-GUGCAUCUUC---------AUGu-GUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 61009 0.67 0.991762
Target:  5'- aGGGCcCGUAGAAGg--GCAGccacugggacugccUCGUGUa -3'
miRNA:   3'- -CCCGuGCAUCUUCaugUGUC--------------AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 59620 0.71 0.921009
Target:  5'- uGGGuCACGUAGuuGGUGaggcccuccaGCAG-CGCGCg -3'
miRNA:   3'- -CCC-GUGCAUCu-UCAUg---------UGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 58707 0.69 0.965283
Target:  5'- uGGGCcag-AGGAGggGCACGGUCGCu- -3'
miRNA:   3'- -CCCGugcaUCUUCa-UGUGUCAGCGcg -5'
3596 5' -51.6 NC_001650.1 + 57898 0.73 0.853016
Target:  5'- aGGGCGCG-GGAuaguagcccgGGUGCACGGggaaggGCGCg -3'
miRNA:   3'- -CCCGUGCaUCU----------UCAUGUGUCag----CGCG- -5'
3596 5' -51.6 NC_001650.1 + 57852 0.8 0.522252
Target:  5'- cGGCACGUAGGgcaGGUACugGGcCuGCGCg -3'
miRNA:   3'- cCCGUGCAUCU---UCAUGugUCaG-CGCG- -5'
3596 5' -51.6 NC_001650.1 + 57533 0.67 0.988308
Target:  5'- aGGCGgGUGGggGUGC-CAccgGCGCu -3'
miRNA:   3'- cCCGUgCAUCuuCAUGuGUcagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 56269 0.67 0.99251
Target:  5'- gGGGUugGgcGAAGgACGgGGgggguggugccuggCGCGCg -3'
miRNA:   3'- -CCCGugCauCUUCaUGUgUCa-------------GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 55063 0.68 0.981251
Target:  5'- aGGUACuaaaucccaGUGGggGUGCAgaaccCAGUaccCGCGCg -3'
miRNA:   3'- cCCGUG---------CAUCuuCAUGU-----GUCA---GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 50465 0.71 0.921009
Target:  5'- cGGGCGCagAGAGGcGCcccuGUCGCGCa -3'
miRNA:   3'- -CCCGUGcaUCUUCaUGugu-CAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 48009 0.66 0.994017
Target:  5'- gGGGC-CGcucAAGUGCAUAGUCacugagaaccugGCGCu -3'
miRNA:   3'- -CCCGuGCaucUUCAUGUGUCAG------------CGCG- -5'
3596 5' -51.6 NC_001650.1 + 46912 0.71 0.915263
Target:  5'- gGGGCugGgggGGggGUuCGCGaUCGCGg -3'
miRNA:   3'- -CCCGugCa--UCuuCAuGUGUcAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 46489 0.66 0.994595
Target:  5'- aGGuCGCG-AGGAGUucaccucggggucaGCcacCGGUCGCGCg -3'
miRNA:   3'- cCC-GUGCaUCUUCA--------------UGu--GUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 40390 0.66 0.994017
Target:  5'- gGGGCGCGaGGGcgAGUcaccaGCGgGGUCaCGCg -3'
miRNA:   3'- -CCCGUGCaUCU--UCA-----UGUgUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 39790 0.71 0.931774
Target:  5'- uGGGCcaccGCGUGGAGccuggGCGCAucUCGCGCg -3'
miRNA:   3'- -CCCG----UGCAUCUUca---UGUGUc-AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 38133 0.66 0.996183
Target:  5'- cGGC-CGgggGGAuguuGUGCugGGcCGCGUa -3'
miRNA:   3'- cCCGuGCa--UCUu---CAUGugUCaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.