Results 41 - 60 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3596 | 5' | -51.6 | NC_001650.1 | + | 68114 | 0.71 | 0.931774 |
Target: 5'- cGGGUugGUcaGGAuggGCGCGGUCuCGCu -3' miRNA: 3'- -CCCGugCA--UCUucaUGUGUCAGcGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 59620 | 0.71 | 0.921009 |
Target: 5'- uGGGuCACGUAGuuGGUGaggcccuccaGCAG-CGCGCg -3' miRNA: 3'- -CCC-GUGCAUCu-UCAUg---------UGUCaGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 50465 | 0.71 | 0.921009 |
Target: 5'- cGGGCGCagAGAGGcGCcccuGUCGCGCa -3' miRNA: 3'- -CCCGUGcaUCUUCaUGugu-CAGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 39790 | 0.71 | 0.931774 |
Target: 5'- uGGGCcaccGCGUGGAGccuggGCGCAucUCGCGCg -3' miRNA: 3'- -CCCG----UGCAUCUUca---UGUGUc-AGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 102822 | 0.7 | 0.936792 |
Target: 5'- uGGGCugGacugGGggGUGaGCuGUCGCuGCu -3' miRNA: 3'- -CCCGugCa---UCuuCAUgUGuCAGCG-CG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 63137 | 0.7 | 0.936792 |
Target: 5'- gGGGCACGUgccagaccccaGGAAcGUguuaaACACaucucugggGGUCGCGCc -3' miRNA: 3'- -CCCGUGCA-----------UCUU-CA-----UGUG---------UCAGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 124142 | 0.7 | 0.950402 |
Target: 5'- uGGGCcccACGUAGGAG-ACGaGGUCGUccGCg -3' miRNA: 3'- -CCCG---UGCAUCUUCaUGUgUCAGCG--CG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 89159 | 0.7 | 0.950402 |
Target: 5'- aGGGC-CGgcgGGAGGcccuCGaAGUCGCGCg -3' miRNA: 3'- -CCCGuGCa--UCUUCau--GUgUCAGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 58707 | 0.69 | 0.965283 |
Target: 5'- uGGGCcag-AGGAGggGCACGGUCGCu- -3' miRNA: 3'- -CCCGugcaUCUUCa-UGUGUCAGCGcg -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 155838 | 0.72 | 0.89658 |
Target: 5'- gGGGCuCGUGGugagcgGGGU-CACGGgggCGCGCg -3' miRNA: 3'- -CCCGuGCAUC------UUCAuGUGUCa--GCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 94168 | 0.73 | 0.840109 |
Target: 5'- gGGGCAgGU-GAAGaGCcuggcgucggccucgGCGGUCGCGCc -3' miRNA: 3'- -CCCGUgCAuCUUCaUG---------------UGUCAGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 11983 | 0.74 | 0.819836 |
Target: 5'- uGGGCACGggGGucuGAGUGCAUgggggucccgguGGUCGCGg -3' miRNA: 3'- -CCCGUGCa-UC---UUCAUGUG------------UCAGCGCg -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 38133 | 0.66 | 0.996183 |
Target: 5'- cGGC-CGgggGGAuguuGUGCugGGcCGCGUa -3' miRNA: 3'- cCCGuGCa--UCUu---CAUGugUCaGCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 73013 | 0.8 | 0.512388 |
Target: 5'- aGGGCACGgGGAAGaACAUGGUCuCGCa -3' miRNA: 3'- -CCCGUGCaUCUUCaUGUGUCAGcGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 74249 | 0.77 | 0.634221 |
Target: 5'- aGGuGCugGUuGAAGUGCACGGgggCGUGUg -3' miRNA: 3'- -CC-CGugCAuCUUCAUGUGUCa--GCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 156210 | 0.77 | 0.665139 |
Target: 5'- gGGGCACGUGGuGGUcACGCAGggGgGCu -3' miRNA: 3'- -CCCGUGCAUCuUCA-UGUGUCagCgCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 129324 | 0.75 | 0.735905 |
Target: 5'- cGGGCGCGgGGGAGUGuCuCAGgaaGCGCg -3' miRNA: 3'- -CCCGUGCaUCUUCAU-GuGUCag-CGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 73203 | 0.74 | 0.802174 |
Target: 5'- aGGgGCGUGGggG--CGCAGgagCGCGCg -3' miRNA: 3'- cCCgUGCAUCuuCauGUGUCa--GCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 142337 | 0.74 | 0.811088 |
Target: 5'- cGGCugGaAGGAGUGCucCAGgagcCGCGCg -3' miRNA: 3'- cCCGugCaUCUUCAUGu-GUCa---GCGCG- -5' |
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3596 | 5' | -51.6 | NC_001650.1 | + | 178690 | 0.74 | 0.819836 |
Target: 5'- uGGGCACGggGGucuGAGUGCAUgggggucccgguGGUCGCGg -3' miRNA: 3'- -CCCGUGCa-UC---UUCAUGUG------------UCAGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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