miRNA display CGI


Results 81 - 91 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 128452 0.68 0.976708
Target:  5'- cGGGCcCGUAGGc--GCGCAGg-GCGCc -3'
miRNA:   3'- -CCCGuGCAUCUucaUGUGUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 157979 0.68 0.976708
Target:  5'- uGGGCGacuuuuugccCGUGGGAGgGC-CGGaCGCGCc -3'
miRNA:   3'- -CCCGU----------GCAUCUUCaUGuGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 31161 0.68 0.976708
Target:  5'- uGGcCAUGUGGGAGgaGgAC-GUCGCGCg -3'
miRNA:   3'- cCC-GUGCAUCUUCa-UgUGuCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 148494 0.68 0.974155
Target:  5'- uGGGCAUcgGGggGUACuuuaaAGagGCGCu -3'
miRNA:   3'- -CCCGUGcaUCuuCAUGug---UCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 121540 0.69 0.968449
Target:  5'- cGGGUgaggccgcacGCGUGGAAG---GCGG-CGCGCa -3'
miRNA:   3'- -CCCG----------UGCAUCUUCaugUGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 58707 0.69 0.965283
Target:  5'- uGGGCcag-AGGAGggGCACGGUCGCu- -3'
miRNA:   3'- -CCCGugcaUCUUCa-UGUGUCAGCGcg -5'
3596 5' -51.6 NC_001650.1 + 89159 0.7 0.950402
Target:  5'- aGGGC-CGgcgGGAGGcccuCGaAGUCGCGCg -3'
miRNA:   3'- -CCCGuGCa--UCUUCau--GUgUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 124142 0.7 0.950402
Target:  5'- uGGGCcccACGUAGGAG-ACGaGGUCGUccGCg -3'
miRNA:   3'- -CCCG---UGCAUCUUCaUGUgUCAGCG--CG- -5'
3596 5' -51.6 NC_001650.1 + 63137 0.7 0.936792
Target:  5'- gGGGCACGUgccagaccccaGGAAcGUguuaaACACaucucugggGGUCGCGCc -3'
miRNA:   3'- -CCCGUGCA-----------UCUU-CA-----UGUG---------UCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 102822 0.7 0.936792
Target:  5'- uGGGCugGacugGGggGUGaGCuGUCGCuGCu -3'
miRNA:   3'- -CCCGugCa---UCuuCAUgUGuCAGCG-CG- -5'
3596 5' -51.6 NC_001650.1 + 21598 1.15 0.004106
Target:  5'- uGGGCACGUAGAAGUACACAGUCGCGCg -3'
miRNA:   3'- -CCCGUGCAUCUUCAUGUGUCAGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.