miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 157979 0.68 0.976708
Target:  5'- uGGGCGacuuuuugccCGUGGGAGgGC-CGGaCGCGCc -3'
miRNA:   3'- -CCCGU----------GCAUCUUCaUGuGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 121540 0.69 0.968449
Target:  5'- cGGGUgaggccgcacGCGUGGAAG---GCGG-CGCGCa -3'
miRNA:   3'- -CCCG----------UGCAUCUUCaugUGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 155838 0.72 0.89658
Target:  5'- gGGGCuCGUGGugagcgGGGU-CACGGgggCGCGCg -3'
miRNA:   3'- -CCCGuGCAUC------UUCAuGUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 156210 0.77 0.665139
Target:  5'- gGGGCACGUGGuGGUcACGCAGggGgGCu -3'
miRNA:   3'- -CCCGUGCAUCuUCA-UGUGUCagCgCG- -5'
3596 5' -51.6 NC_001650.1 + 157498 0.67 0.992089
Target:  5'- cGGGgGCGgGGAGGUGCcccCAG--GCGCa -3'
miRNA:   3'- -CCCgUGCaUCUUCAUGu--GUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 72841 0.67 0.986777
Target:  5'- gGGGCAgGUgaGGAAGgaggugGC-CAG-CGUGCg -3'
miRNA:   3'- -CCCGUgCA--UCUUCa-----UGuGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 89159 0.7 0.950402
Target:  5'- aGGGC-CGgcgGGAGGcccuCGaAGUCGCGCg -3'
miRNA:   3'- -CCCGuGCa--UCUUCau--GUgUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 74249 0.77 0.634221
Target:  5'- aGGuGCugGUuGAAGUGCACGGgggCGUGUg -3'
miRNA:   3'- -CC-CGugCAuCUUCAUGUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 55063 0.68 0.981251
Target:  5'- aGGUACuaaaucccaGUGGggGUGCAgaaccCAGUaccCGCGCg -3'
miRNA:   3'- cCCGUG---------CAUCuuCAUGU-----GUCA---GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 73013 0.8 0.512388
Target:  5'- aGGGCACGgGGAAGaACAUGGUCuCGCa -3'
miRNA:   3'- -CCCGUGCaUCUUCaUGUGUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 58707 0.69 0.965283
Target:  5'- uGGGCcag-AGGAGggGCACGGUCGCu- -3'
miRNA:   3'- -CCCGugcaUCUUCa-UGUGUCAGCGcg -5'
3596 5' -51.6 NC_001650.1 + 128452 0.68 0.976708
Target:  5'- cGGGCcCGUAGGc--GCGCAGg-GCGCc -3'
miRNA:   3'- -CCCGuGCAUCUucaUGUGUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 102822 0.7 0.936792
Target:  5'- uGGGCugGacugGGggGUGaGCuGUCGCuGCu -3'
miRNA:   3'- -CCCGugCa---UCuuCAUgUGuCAGCG-CG- -5'
3596 5' -51.6 NC_001650.1 + 59620 0.71 0.921009
Target:  5'- uGGGuCACGUAGuuGGUGaggcccuccaGCAG-CGCGCg -3'
miRNA:   3'- -CCC-GUGCAUCu-UCAUg---------UGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 178690 0.74 0.819836
Target:  5'- uGGGCACGggGGucuGAGUGCAUgggggucccgguGGUCGCGg -3'
miRNA:   3'- -CCCGUGCa-UC---UUCAUGUG------------UCAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 129324 0.75 0.735905
Target:  5'- cGGGCGCGgGGGAGUGuCuCAGgaaGCGCg -3'
miRNA:   3'- -CCCGUGCaUCUUCAU-GuGUCag-CGCG- -5'
3596 5' -51.6 NC_001650.1 + 168643 0.66 0.992912
Target:  5'- uGGGUugGgucagggggauGAGGUAgGCGGUUGCcagGCa -3'
miRNA:   3'- -CCCGugCau---------CUUCAUgUGUCAGCG---CG- -5'
3596 5' -51.6 NC_001650.1 + 132258 0.67 0.992089
Target:  5'- cGGGgACGguguuGggGUACuCGGcCGCGg -3'
miRNA:   3'- -CCCgUGCau---CuuCAUGuGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 155772 0.67 0.990956
Target:  5'- gGGGCugGUGGccGAGcGCGCGGccagggagacCGUGCu -3'
miRNA:   3'- -CCCGugCAUC--UUCaUGUGUCa---------GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 118957 0.67 0.988308
Target:  5'- gGGGgGCGgcGAGGggGCGguGUacgagaGCGCg -3'
miRNA:   3'- -CCCgUGCauCUUCa-UGUguCAg-----CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.