miRNA display CGI


Results 41 - 60 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 168507 0.66 0.995548
Target:  5'- gGGGUuuAUGgaguGAGGUAgGCAGUUGCcagGCa -3'
miRNA:   3'- -CCCG--UGCau--CUUCAUgUGUCAGCG---CG- -5'
3596 5' -51.6 NC_001650.1 + 31161 0.68 0.976708
Target:  5'- uGGcCAUGUGGGAGgaGgAC-GUCGCGCg -3'
miRNA:   3'- cCC-GUGCAUCUUCa-UgUGuCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 72841 0.67 0.986777
Target:  5'- gGGGCAgGUgaGGAAGgaggugGC-CAG-CGUGCg -3'
miRNA:   3'- -CCCGUgCA--UCUUCa-----UGuGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 155772 0.67 0.990956
Target:  5'- gGGGCugGUGGccGAGcGCGCGGccagggagacCGUGCu -3'
miRNA:   3'- -CCCGugCAUC--UUCaUGUGUCa---------GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 157498 0.67 0.992089
Target:  5'- cGGGgGCGgGGAGGUGCcccCAG--GCGCa -3'
miRNA:   3'- -CCCgUGCaUCUUCAUGu--GUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 38133 0.66 0.996183
Target:  5'- cGGC-CGgggGGAuguuGUGCugGGcCGCGUa -3'
miRNA:   3'- cCCGuGCa--UCUu---CAUGugUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 105906 0.66 0.995126
Target:  5'- aGGCACGUAGGgccgcaccaggauagGGUACAgguUGGUgaGCGUg -3'
miRNA:   3'- cCCGUGCAUCU---------------UCAUGU---GUCAg-CGCG- -5'
3596 5' -51.6 NC_001650.1 + 46489 0.66 0.994595
Target:  5'- aGGuCGCG-AGGAGUucaccucggggucaGCcacCGGUCGCGCg -3'
miRNA:   3'- cCC-GUGCaUCUUCA--------------UGu--GUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 101173 0.66 0.994017
Target:  5'- aGGCACucgugGUAGAGGgugauCAGUCGCa- -3'
miRNA:   3'- cCCGUG-----CAUCUUCaugu-GUCAGCGcg -5'
3596 5' -51.6 NC_001650.1 + 1936 0.66 0.992912
Target:  5'- uGGGUugGgucagggggauGAGGUAgGCGGUUGCcagGCa -3'
miRNA:   3'- -CCCGugCau---------CUUCAUgUGUCAGCG---CG- -5'
3596 5' -51.6 NC_001650.1 + 67256 0.68 0.985096
Target:  5'- cGGCcgcuCGUAGcAGUACAgGGggaUCGCGUu -3'
miRNA:   3'- cCCGu---GCAUCuUCAUGUgUC---AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 28455 0.67 0.986777
Target:  5'- cGGGCACc---GAGUACAaGGUgGUGCa -3'
miRNA:   3'- -CCCGUGcaucUUCAUGUgUCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 81594 0.67 0.986777
Target:  5'- cGGGguCGcccgacgcGAGGUcgccGCACAGggCGCGCg -3'
miRNA:   3'- -CCCguGCau------CUUCA----UGUGUCa-GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 88311 0.68 0.983257
Target:  5'- gGGGCGCGgcggGGAGGUguucguguucgAgGCGGaCGCGg -3'
miRNA:   3'- -CCCGUGCa---UCUUCA-----------UgUGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 164727 0.68 0.978843
Target:  5'- aGGGCcgccugaGCGaGGAGGggga-GGUCGCGCg -3'
miRNA:   3'- -CCCG-------UGCaUCUUCaugugUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 46912 0.71 0.915263
Target:  5'- gGGGCugGgggGGggGUuCGCGaUCGCGg -3'
miRNA:   3'- -CCCGugCa--UCuuCAuGUGUcAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 61009 0.67 0.991762
Target:  5'- aGGGCcCGUAGAAGg--GCAGccacugggacugccUCGUGUa -3'
miRNA:   3'- -CCCGuGCAUCUUCaugUGUC--------------AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 61246 0.7 0.946104
Target:  5'- cGGcCACGUGGAGGgcgguggccUGCucCAGcCGCGCg -3'
miRNA:   3'- cCC-GUGCAUCUUC---------AUGu-GUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 154516 0.7 0.946104
Target:  5'- uGGGCAUGUAGuaccuGGgGCACgAGUCugGCGUc -3'
miRNA:   3'- -CCCGUGCAUCu----UCaUGUG-UCAG--CGCG- -5'
3596 5' -51.6 NC_001650.1 + 131683 0.7 0.954465
Target:  5'- gGGGCG-GUGGAGGUGCuCAGgacCGUGg -3'
miRNA:   3'- -CCCGUgCAUCUUCAUGuGUCa--GCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.