miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 136323 0.71 0.931259
Target:  5'- uGGCACGUgaGGAGGUagguggcgaagcaGgACAGgucCGCGCa -3'
miRNA:   3'- cCCGUGCA--UCUUCA-------------UgUGUCa--GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 107679 0.71 0.925432
Target:  5'- gGGGCGCGgAGAAGUGCcugccuguuauuCAGUUuagGUGCg -3'
miRNA:   3'- -CCCGUGCaUCUUCAUGu-----------GUCAG---CGCG- -5'
3596 5' -51.6 NC_001650.1 + 46912 0.71 0.915263
Target:  5'- gGGGCugGgggGGggGUuCGCGaUCGCGg -3'
miRNA:   3'- -CCCGugCa--UCuuCAuGUGUcAGCGCg -5'
3596 5' -51.6 NC_001650.1 + 118047 0.71 0.908662
Target:  5'- cGGGCAgGcUGGAcgAGUACAgcccguggcgcacCAGcCGCGCg -3'
miRNA:   3'- -CCCGUgC-AUCU--UCAUGU-------------GUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 123951 0.72 0.88295
Target:  5'- gGGGCccACGgggguGGAGUACACGGggGCGUu -3'
miRNA:   3'- -CCCG--UGCau---CUUCAUGUGUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 72206 0.69 0.971404
Target:  5'- aGGCACGccGAGGUGCACG--UGgGCa -3'
miRNA:   3'- cCCGUGCauCUUCAUGUGUcaGCgCG- -5'
3596 5' -51.6 NC_001650.1 + 88680 0.69 0.971404
Target:  5'- aGGGgAUGgAGGAGUAgGCGG-CGCGg -3'
miRNA:   3'- -CCCgUGCaUCUUCAUgUGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 78111 0.66 0.996183
Target:  5'- cGGGgGCGac-GAGUGCAUAGUgGUGa -3'
miRNA:   3'- -CCCgUGCaucUUCAUGUGUCAgCGCg -5'
3596 5' -51.6 NC_001650.1 + 24183 0.66 0.996183
Target:  5'- gGGGuCGCGcUGGAGGUGcCGCuGUCcucCGCc -3'
miRNA:   3'- -CCC-GUGC-AUCUUCAU-GUGuCAGc--GCG- -5'
3596 5' -51.6 NC_001650.1 + 155185 0.66 0.996123
Target:  5'- aGGGCgaucaugcccaggGCGUccaGGGAGUACucCAGcccgucCGCGCg -3'
miRNA:   3'- -CCCG-------------UGCA---UCUUCAUGu-GUCa-----GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 22371 0.66 0.994828
Target:  5'- uGGGCAgCGgGGAGG-ACcCGuUCGCGCu -3'
miRNA:   3'- -CCCGU-GCaUCUUCaUGuGUcAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 48009 0.66 0.994017
Target:  5'- gGGGC-CGcucAAGUGCAUAGUCacugagaaccugGCGCu -3'
miRNA:   3'- -CCCGuGCaucUUCAUGUGUCAG------------CGCG- -5'
3596 5' -51.6 NC_001650.1 + 40390 0.66 0.994017
Target:  5'- gGGGCGCGaGGGcgAGUcaccaGCGgGGUCaCGCg -3'
miRNA:   3'- -CCCGUGCaUCU--UCA-----UGUgUCAGcGCG- -5'
3596 5' -51.6 NC_001650.1 + 93051 0.67 0.990956
Target:  5'- cGGGCACGgcGggGgcggguaagaGCACuAGUaucucgGCGCu -3'
miRNA:   3'- -CCCGUGCauCuuCa---------UGUG-UCAg-----CGCG- -5'
3596 5' -51.6 NC_001650.1 + 81594 0.67 0.986777
Target:  5'- cGGGguCGcccgacgcGAGGUcgccGCACAGggCGCGCg -3'
miRNA:   3'- -CCCguGCau------CUUCA----UGUGUCa-GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 28455 0.67 0.986777
Target:  5'- cGGGCACc---GAGUACAaGGUgGUGCa -3'
miRNA:   3'- -CCCGUGcaucUUCAUGUgUCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 67256 0.68 0.985096
Target:  5'- cGGCcgcuCGUAGcAGUACAgGGggaUCGCGUu -3'
miRNA:   3'- cCCGu---GCAUCuUCAUGUgUC---AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 88311 0.68 0.983257
Target:  5'- gGGGCGCGgcggGGAGGUguucguguucgAgGCGGaCGCGg -3'
miRNA:   3'- -CCCGUGCa---UCUUCA-----------UgUGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 164727 0.68 0.978843
Target:  5'- aGGGCcgccugaGCGaGGAGGggga-GGUCGCGCg -3'
miRNA:   3'- -CCCG-------UGCaUCUUCaugugUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 100516 0.69 0.971404
Target:  5'- gGGGaUAUGUgcgGGGAGUagcGCGCGGUCuCGCg -3'
miRNA:   3'- -CCC-GUGCA---UCUUCA---UGUGUCAGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.