miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3596 5' -51.6 NC_001650.1 + 119117 0.67 0.992196
Target:  5'- -aGCugGagaaGGggGUGCACAGguuccugugggacaaCGCGCg -3'
miRNA:   3'- ccCGugCa---UCuuCAUGUGUCa--------------GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 122466 0.67 0.992089
Target:  5'- cGGGUACGUGGAcGUGCc----CGUGCc -3'
miRNA:   3'- -CCCGUGCAUCUuCAUGugucaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 143051 0.67 0.992089
Target:  5'- cGGGcCACGcGGAGG-GCGCcGagGCGCu -3'
miRNA:   3'- -CCC-GUGCaUCUUCaUGUGuCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 132258 0.67 0.992089
Target:  5'- cGGGgACGguguuGggGUACuCGGcCGCGg -3'
miRNA:   3'- -CCCgUGCau---CuuCAUGuGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 157498 0.67 0.992089
Target:  5'- cGGGgGCGgGGAGGUGCcccCAG--GCGCa -3'
miRNA:   3'- -CCCgUGCaUCUUCAUGu--GUCagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 129279 0.67 0.992089
Target:  5'- cGGcCACGUccAGccugGCGgGGUCGCGCg -3'
miRNA:   3'- cCC-GUGCA--UCuucaUGUgUCAGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 2353 0.67 0.991872
Target:  5'- gGGGCAgGguuagagagauGAGGUAgGCAGUUGC-Ca -3'
miRNA:   3'- -CCCGUgCau---------CUUCAUgUGUCAGCGcG- -5'
3596 5' -51.6 NC_001650.1 + 169060 0.67 0.991872
Target:  5'- gGGGCAgGguuagagagauGAGGUAgGCAGUUGC-Ca -3'
miRNA:   3'- -CCCGUgCau---------CUUCAUgUGUCAGCGcG- -5'
3596 5' -51.6 NC_001650.1 + 61009 0.67 0.991762
Target:  5'- aGGGCcCGUAGAAGg--GCAGccacugggacugccUCGUGUa -3'
miRNA:   3'- -CCCGuGCAUCUUCaugUGUC--------------AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 93051 0.67 0.990956
Target:  5'- cGGGCACGgcGggGgcggguaagaGCACuAGUaucucgGCGCu -3'
miRNA:   3'- -CCCGUGCauCuuCa---------UGUG-UCAg-----CGCG- -5'
3596 5' -51.6 NC_001650.1 + 155772 0.67 0.990956
Target:  5'- gGGGCugGUGGccGAGcGCGCGGccagggagacCGUGCu -3'
miRNA:   3'- -CCCGugCAUC--UUCaUGUGUCa---------GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 57533 0.67 0.988308
Target:  5'- aGGCGgGUGGggGUGC-CAccgGCGCu -3'
miRNA:   3'- cCCGUgCAUCuuCAUGuGUcagCGCG- -5'
3596 5' -51.6 NC_001650.1 + 69131 0.67 0.988308
Target:  5'- gGGGCgGCGUAGAgcgcuGGUACGuguacCcGcCGCGCa -3'
miRNA:   3'- -CCCG-UGCAUCU-----UCAUGU-----GuCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 118957 0.67 0.988308
Target:  5'- gGGGgGCGgcGAGGggGCGguGUacgagaGCGCg -3'
miRNA:   3'- -CCCgUGCauCUUCa-UGUguCAg-----CGCG- -5'
3596 5' -51.6 NC_001650.1 + 28455 0.67 0.986777
Target:  5'- cGGGCACc---GAGUACAaGGUgGUGCa -3'
miRNA:   3'- -CCCGUGcaucUUCAUGUgUCAgCGCG- -5'
3596 5' -51.6 NC_001650.1 + 72841 0.67 0.986777
Target:  5'- gGGGCAgGUgaGGAAGgaggugGC-CAG-CGUGCg -3'
miRNA:   3'- -CCCGUgCA--UCUUCa-----UGuGUCaGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 81594 0.67 0.986777
Target:  5'- cGGGguCGcccgacgcGAGGUcgccGCACAGggCGCGCg -3'
miRNA:   3'- -CCCguGCau------CUUCA----UGUGUCa-GCGCG- -5'
3596 5' -51.6 NC_001650.1 + 67256 0.68 0.985096
Target:  5'- cGGCcgcuCGUAGcAGUACAgGGggaUCGCGUu -3'
miRNA:   3'- cCCGu---GCAUCuUCAUGUgUC---AGCGCG- -5'
3596 5' -51.6 NC_001650.1 + 88311 0.68 0.983257
Target:  5'- gGGGCGCGgcggGGAGGUguucguguucgAgGCGGaCGCGg -3'
miRNA:   3'- -CCCGUGCa---UCUUCA-----------UgUGUCaGCGCg -5'
3596 5' -51.6 NC_001650.1 + 55063 0.68 0.981251
Target:  5'- aGGUACuaaaucccaGUGGggGUGCAgaaccCAGUaccCGCGCg -3'
miRNA:   3'- cCCGUG---------CAUCuuCAUGU-----GUCA---GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.