miRNA display CGI


Results 41 - 60 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 3' -55.3 NC_001650.1 + 121962 0.68 0.857095
Target:  5'- -gCUCCccgagcUGGAGGCCaugcugCGGGGGCGGg -3'
miRNA:   3'- uaGAGGu-----AUUUCCGGa-----GCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 123939 0.7 0.751034
Target:  5'- cGUCUCCuacguGGGGCCcaCGGGGGUGGa -3'
miRNA:   3'- -UAGAGGuau--UUCCGGa-GCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 125017 0.66 0.923779
Target:  5'- gAUCgCCAgagGGGGUCcCGGGGGCGGa -3'
miRNA:   3'- -UAGaGGUau-UUCCGGaGCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 127679 0.66 0.939168
Target:  5'- -cCUCCAUcucgAGGGGCUUCagGGAGGCc-- -3'
miRNA:   3'- uaGAGGUA----UUUCCGGAG--CCUCCGcug -5'
3597 3' -55.3 NC_001650.1 + 128236 0.67 0.91231
Target:  5'- -cCUCCAccuucuGGGUCUCGGcGGUGAg -3'
miRNA:   3'- uaGAGGUauu---UCCGGAGCCuCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 129126 0.66 0.918165
Target:  5'- -aCUCCcccgcgcccGGGGCCgaggacaCGGGGGCGGCc -3'
miRNA:   3'- uaGAGGuau------UUCCGGa------GCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 129644 0.68 0.857095
Target:  5'- -aCUCCcu---GGCCUCcucguuGGGGGCGGCc -3'
miRNA:   3'- uaGAGGuauuuCCGGAG------CCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 130312 0.68 0.849209
Target:  5'- gAUCUCCGccuuGGgCUUGGcGGGCGGCu -3'
miRNA:   3'- -UAGAGGUauuuCCgGAGCC-UCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 130969 0.67 0.899883
Target:  5'- -aCUCCc-AGAGGCC-CGucuucGAGGCGGCg -3'
miRNA:   3'- uaGAGGuaUUUCCGGaGC-----CUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 131104 0.7 0.751034
Target:  5'- -gCUCCAgGAcccgcucguGGGUCUCGGGGGCG-Cu -3'
miRNA:   3'- uaGAGGUaUU---------UCCGGAGCCUCCGCuG- -5'
3597 3' -55.3 NC_001650.1 + 132364 0.66 0.93428
Target:  5'- uUCUCCGccccgccGGCCUCGGuGG-GGCc -3'
miRNA:   3'- uAGAGGUauuu---CCGGAGCCuCCgCUG- -5'
3597 3' -55.3 NC_001650.1 + 134093 0.68 0.841125
Target:  5'- gGUC-CCAggggcGGCCUCuaGAGGCGACc -3'
miRNA:   3'- -UAGaGGUauuu-CCGGAGc-CUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 135256 0.66 0.93428
Target:  5'- aAUC-CCAUAGuGGCCgCuGAGGUGGCc -3'
miRNA:   3'- -UAGaGGUAUUuCCGGaGcCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 136086 0.67 0.893316
Target:  5'- ---gCCAUGAAGGC---GGGGGCGGCc -3'
miRNA:   3'- uagaGGUAUUUCCGgagCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 145389 0.73 0.598944
Target:  5'- cAUCUCCAUGGggauGGCCgcgUGGGGGUGGu -3'
miRNA:   3'- -UAGAGGUAUUu---CCGGa--GCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 155708 0.69 0.788851
Target:  5'- uUCUCCcu--GGGCCUCGGGGaGCu-- -3'
miRNA:   3'- uAGAGGuauuUCCGGAGCCUC-CGcug -5'
3597 3' -55.3 NC_001650.1 + 156116 0.67 0.906215
Target:  5'- uUCUCCAgguucGGGGCCUgccugaaGGAGGCa-- -3'
miRNA:   3'- uAGAGGUau---UUCCGGAg------CCUCCGcug -5'
3597 3' -55.3 NC_001650.1 + 161011 0.69 0.788851
Target:  5'- -cCUCCAUgGGGGGUCUUGGAauGCGGCg -3'
miRNA:   3'- uaGAGGUA-UUUCCGGAGCCUc-CGCUG- -5'
3597 3' -55.3 NC_001650.1 + 165731 0.71 0.721527
Target:  5'- uUUUCUcgGGGGGCC-CGG-GGCGGCu -3'
miRNA:   3'- uAGAGGuaUUUCCGGaGCCuCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 167533 0.66 0.923779
Target:  5'- ---aCCaAUGGGGGCC-CGGgggaGGGCGGCa -3'
miRNA:   3'- uagaGG-UAUUUCCGGaGCC----UCCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.