miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 3' -55.3 NC_001650.1 + 826 0.66 0.923779
Target:  5'- ---aCCaAUGGGGGCC-CGGgggaGGGCGGCa -3'
miRNA:   3'- uagaGG-UAUUUCCGGaGCC----UCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 35313 0.66 0.918165
Target:  5'- -aUUCCuugGucGGCCgcgaGGGGGCGGCc -3'
miRNA:   3'- uaGAGGua-UuuCCGGag--CCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 107524 0.66 0.918165
Target:  5'- gGUCUCCGUGGGGGaCCUgcugcagaacaGGcaGGGCGAg -3'
miRNA:   3'- -UAGAGGUAUUUCC-GGAg----------CC--UCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 88428 0.66 0.918165
Target:  5'- cUCUCgAacgcGGAGGCCUCGccggccGAGGCGGg -3'
miRNA:   3'- uAGAGgUa---UUUCCGGAGC------CUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 129126 0.66 0.918165
Target:  5'- -aCUCCcccgcgcccGGGGCCgaggacaCGGGGGCGGCc -3'
miRNA:   3'- uaGAGGuau------UUCCGGa------GCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 77920 0.67 0.91231
Target:  5'- cUCUCUAcagaAAAGGCCcCGccuauacaGAGGCGGCa -3'
miRNA:   3'- uAGAGGUa---UUUCCGGaGC--------CUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 128236 0.67 0.91231
Target:  5'- -cCUCCAccuucuGGGUCUCGGcGGUGAg -3'
miRNA:   3'- uaGAGGUauu---UCCGGAGCCuCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 156116 0.67 0.906215
Target:  5'- uUCUCCAgguucGGGGCCUgccugaaGGAGGCa-- -3'
miRNA:   3'- uAGAGGUau---UUCCGGAg------CCUCCGcug -5'
3597 3' -55.3 NC_001650.1 + 34288 0.67 0.899883
Target:  5'- uUCUCCcucuuugGGAGcauaGUCUCGGGGGUGAUa -3'
miRNA:   3'- uAGAGGua-----UUUC----CGGAGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 130969 0.67 0.899883
Target:  5'- -aCUCCc-AGAGGCC-CGucuucGAGGCGGCg -3'
miRNA:   3'- uaGAGGuaUUUCCGGaGC-----CUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 74751 0.67 0.899883
Target:  5'- -aCUCUA---GGGCCaCGGuGGCGGCc -3'
miRNA:   3'- uaGAGGUauuUCCGGaGCCuCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 136086 0.67 0.893316
Target:  5'- ---gCCAUGAAGGC---GGGGGCGGCc -3'
miRNA:   3'- uagaGGUAUUUCCGgagCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 27474 0.67 0.893316
Target:  5'- --gUCCAgaagcAGGCCUCcaaccGGGGCGGCg -3'
miRNA:   3'- uagAGGUauu--UCCGGAGc----CUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 117348 0.67 0.893316
Target:  5'- -cCUCC-UAAAGuaCCaCGGGGGCGACg -3'
miRNA:   3'- uaGAGGuAUUUCc-GGaGCCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 102463 0.67 0.886517
Target:  5'- --gUCCAgcagcAGGCCgcccaGGAGGUGGCg -3'
miRNA:   3'- uagAGGUauu--UCCGGag---CCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 1290 0.68 0.857095
Target:  5'- cAUCaagCCaAUGGGGGCC-CGGGGGUGGg -3'
miRNA:   3'- -UAGa--GG-UAUUUCCGGaGCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 129644 0.68 0.857095
Target:  5'- -aCUCCcu---GGCCUCcucguuGGGGGCGGCc -3'
miRNA:   3'- uaGAGGuauuuCCGGAG------CCUCCGCUG- -5'
3597 3' -55.3 NC_001650.1 + 167997 0.68 0.857095
Target:  5'- cAUCaagCCaAUGGGGGCC-CGGGGGUGGg -3'
miRNA:   3'- -UAGa--GG-UAUUUCCGGaGCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 121962 0.68 0.857095
Target:  5'- -gCUCCccgagcUGGAGGCCaugcugCGGGGGCGGg -3'
miRNA:   3'- uaGAGGu-----AUUUCCGGa-----GCCUCCGCUg -5'
3597 3' -55.3 NC_001650.1 + 130312 0.68 0.849209
Target:  5'- gAUCUCCGccuuGGgCUUGGcGGGCGGCu -3'
miRNA:   3'- -UAGAGGUauuuCCgGAGCC-UCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.