miRNA display CGI


Results 21 - 40 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 5' -64.8 NC_001650.1 + 95828 0.66 0.549898
Target:  5'- gCGCCGCuGCCGCcGCCgCUUCUcaaaagagaaAGCAc -3'
miRNA:   3'- gGUGGCGuCGGCGcCGG-GAGGG----------UCGU- -5'
3597 5' -64.8 NC_001650.1 + 25233 0.66 0.549898
Target:  5'- aCAUCGaGGCCGCcuGGCCCgaggccaCCAGCc -3'
miRNA:   3'- gGUGGCgUCGGCG--CCGGGag-----GGUCGu -5'
3597 5' -64.8 NC_001650.1 + 137539 0.66 0.549898
Target:  5'- gCACCuGCAcCCGCuGGCCCUCagCuGCAu -3'
miRNA:   3'- gGUGG-CGUcGGCG-CCGGGAGg-GuCGU- -5'
3597 5' -64.8 NC_001650.1 + 101831 0.66 0.549898
Target:  5'- -gGCCGCAGCaGCaGGUgCUC-CAGCAg -3'
miRNA:   3'- ggUGGCGUCGgCG-CCGgGAGgGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 49124 0.66 0.548033
Target:  5'- aCCACCGUcagGGCgGCGGgagugaccuccaCCUUCCAGUu -3'
miRNA:   3'- -GGUGGCG---UCGgCGCCg-----------GGAGGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 157380 0.66 0.540593
Target:  5'- -aGgCGCAGCCGUugaGGCCCgcggCCUucuGCAg -3'
miRNA:   3'- ggUgGCGUCGGCG---CCGGGa---GGGu--CGU- -5'
3597 5' -64.8 NC_001650.1 + 111091 0.66 0.540593
Target:  5'- gUCGCCGCGGCgGCGGCgauaggggCCCguAGCu -3'
miRNA:   3'- -GGUGGCGUCGgCGCCGgga-----GGG--UCGu -5'
3597 5' -64.8 NC_001650.1 + 90555 0.66 0.540593
Target:  5'- gUAgCGgGGCUGCGuGCCCUCgagguCCAGCu -3'
miRNA:   3'- gGUgGCgUCGGCGC-CGGGAG-----GGUCGu -5'
3597 5' -64.8 NC_001650.1 + 3510 0.66 0.531341
Target:  5'- gCCGCCGCuccucaccaCGUGGCCCcuaCCGGCc -3'
miRNA:   3'- -GGUGGCGucg------GCGCCGGGag-GGUCGu -5'
3597 5' -64.8 NC_001650.1 + 166340 0.66 0.531341
Target:  5'- gCCAcCCGCGGCCuGUgGGCCC-CUguGUAa -3'
miRNA:   3'- -GGU-GGCGUCGG-CG-CCGGGaGGguCGU- -5'
3597 5' -64.8 NC_001650.1 + 170217 0.66 0.531341
Target:  5'- gCCGCCGCuccucaccaCGUGGCCCcuaCCGGCc -3'
miRNA:   3'- -GGUGGCGucg------GCGCCGGGag-GGUCGu -5'
3597 5' -64.8 NC_001650.1 + 60331 0.66 0.531341
Target:  5'- -gACCGCGGaCGCGGCCUcCgCgGGCGg -3'
miRNA:   3'- ggUGGCGUCgGCGCCGGGaG-GgUCGU- -5'
3597 5' -64.8 NC_001650.1 + 78818 0.66 0.531341
Target:  5'- uCUGCCGCAGCgGC-GCCCgcaCAGCc -3'
miRNA:   3'- -GGUGGCGUCGgCGcCGGGaggGUCGu -5'
3597 5' -64.8 NC_001650.1 + 46236 0.66 0.531341
Target:  5'- -gGCCGCGGCCGCuGUCaa-UCAGCGa -3'
miRNA:   3'- ggUGGCGUCGGCGcCGGgagGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 156624 0.66 0.530419
Target:  5'- aUCACCGCccucuccAGCUG-GGCCCUguagUCCGGCc -3'
miRNA:   3'- -GGUGGCG-------UCGGCgCCGGGA----GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 60132 0.67 0.522147
Target:  5'- -gGCCGCGuCCGCGGUCUccagggCCAGCAg -3'
miRNA:   3'- ggUGGCGUcGGCGCCGGGag----GGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 50314 0.67 0.522147
Target:  5'- cCCAaaGCGcGCCuCGuCCCUCCCGGCc -3'
miRNA:   3'- -GGUggCGU-CGGcGCcGGGAGGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 26849 0.67 0.522147
Target:  5'- uUCACCG-AGaCCGUGGCCgggUCCAGCu -3'
miRNA:   3'- -GGUGGCgUC-GGCGCCGGga-GGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 122320 0.67 0.522147
Target:  5'- gCCGCCGCGGCCGCcuUCCUCaaGGa- -3'
miRNA:   3'- -GGUGGCGUCGGCGccGGGAGggUCgu -5'
3597 5' -64.8 NC_001650.1 + 124308 0.67 0.521231
Target:  5'- -gGCCGCGGCggacgagguggCGCGaGUCCUCCCcaacacgGGCGc -3'
miRNA:   3'- ggUGGCGUCG-----------GCGC-CGGGAGGG-------UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.