miRNA display CGI


Results 21 - 40 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3598 3' -67.2 NC_001650.1 + 88699 0.66 0.496739
Target:  5'- gCCCGGCGUCCCCgcccCGCCcGGaGGa--- -3'
miRNA:   3'- gGGGCCGCAGGGG----GUGGuCC-CCcgcg -5'
3598 3' -67.2 NC_001650.1 + 14128 0.66 0.488069
Target:  5'- uCCCgGGgGUCCa-----GGGGGGCGCc -3'
miRNA:   3'- -GGGgCCgCAGGggguggUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 129001 0.66 0.488069
Target:  5'- gCCCCGGCGUucuugagguaguUCUCCAgcaugggcacggUCAGGGuccuggacacGGCGCc -3'
miRNA:   3'- -GGGGCCGCA------------GGGGGU------------GGUCCC----------CCGCG- -5'
3598 3' -67.2 NC_001650.1 + 57033 0.66 0.488069
Target:  5'- cUCCCGGCGUCaCCCUcuGCgAGGaaaGGUGa -3'
miRNA:   3'- -GGGGCCGCAG-GGGG--UGgUCCc--CCGCg -5'
3598 3' -67.2 NC_001650.1 + 124947 0.66 0.488069
Target:  5'- cCCCCGGC-UCCuCUCAUC---GGGCGCc -3'
miRNA:   3'- -GGGGCCGcAGG-GGGUGGuccCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 9069 0.66 0.488069
Target:  5'- cUCCCaGGCaG-CgUCCGCgAGGGGGCGa -3'
miRNA:   3'- -GGGG-CCG-CaGgGGGUGgUCCCCCGCg -5'
3598 3' -67.2 NC_001650.1 + 180835 0.66 0.488069
Target:  5'- uCCCgGGgGUCCa-----GGGGGGCGCc -3'
miRNA:   3'- -GGGgCCgCAGGggguggUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 175776 0.66 0.488069
Target:  5'- cUCCCaGGCaG-CgUCCGCgAGGGGGCGa -3'
miRNA:   3'- -GGGG-CCG-CaGgGGGUGgUCCCCCGCg -5'
3598 3' -67.2 NC_001650.1 + 31067 0.66 0.488069
Target:  5'- uCCCCGcucgaGUCCCUguuUugC-GGGGGCGUg -3'
miRNA:   3'- -GGGGCcg---CAGGGG---GugGuCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 96236 0.66 0.487206
Target:  5'- gCCUgGGCG-CCCCCGggucgcuggucauCCuGGGuGGCGa -3'
miRNA:   3'- -GGGgCCGCaGGGGGU-------------GGuCCC-CCGCg -5'
3598 3' -67.2 NC_001650.1 + 51017 0.66 0.487206
Target:  5'- gCgCGGCGgCCCCCuCUcagaucaAGGuGGGCGUg -3'
miRNA:   3'- gGgGCCGCaGGGGGuGG-------UCC-CCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 148211 0.66 0.479471
Target:  5'- uCCCaCGG-GaCCCCU--CAGGGGGCGg -3'
miRNA:   3'- -GGG-GCCgCaGGGGGugGUCCCCCGCg -5'
3598 3' -67.2 NC_001650.1 + 76797 0.66 0.479471
Target:  5'- gCCaCGuGCGccUCCCUCACgAaGGGGUGCa -3'
miRNA:   3'- gGG-GC-CGC--AGGGGGUGgUcCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 60853 0.66 0.476906
Target:  5'- aCCCCaggcagcuggagacGGUGgCCCCCcucaACCGGcaGGGCGCc -3'
miRNA:   3'- -GGGG--------------CCGCaGGGGG----UGGUCc-CCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 27468 0.66 0.470947
Target:  5'- gCCCGG-GUCCagaagcaggccUCCaACCGGGGcGGCGg -3'
miRNA:   3'- gGGGCCgCAGG-----------GGG-UGGUCCC-CCGCg -5'
3598 3' -67.2 NC_001650.1 + 130819 0.66 0.470947
Target:  5'- aCCUGGCgGUCCUCCAggAGGaGGCGg -3'
miRNA:   3'- gGGGCCG-CAGGGGGUggUCCcCCGCg -5'
3598 3' -67.2 NC_001650.1 + 27044 0.66 0.470947
Target:  5'- gCCCCGGgcagcagGUgCCCCAggUCGGccaacucgaaGGGGCGCg -3'
miRNA:   3'- -GGGGCCg------CAgGGGGU--GGUC----------CCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 173673 0.66 0.470947
Target:  5'- aCCUGG-GUUgCCaggcagACUAGGGGGUGCu -3'
miRNA:   3'- gGGGCCgCAGgGGg-----UGGUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 6966 0.66 0.470947
Target:  5'- aCCUGG-GUUgCCaggcagACUAGGGGGUGCu -3'
miRNA:   3'- gGGGCCgCAGgGGg-----UGGUCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 88732 0.66 0.470947
Target:  5'- uCCUCGGgGaagCCCCCgGCCGGcaagcGGGGCa- -3'
miRNA:   3'- -GGGGCCgCa--GGGGG-UGGUC-----CCCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.