miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3598 5' -54.8 NC_001650.1 + 107537 0.66 0.929295
Target:  5'- -gGCUGCCCCCgggGGUCuccGUGggggaCCu -3'
miRNA:   3'- aaCGACGGGGGa--CUAGuu-CACaa---GGu -5'
3598 5' -54.8 NC_001650.1 + 58799 0.66 0.918172
Target:  5'- gUGC-GCCUCCUGA--AGGUGcUCCAc -3'
miRNA:   3'- aACGaCGGGGGACUagUUCACaAGGU- -5'
3598 5' -54.8 NC_001650.1 + 81726 0.67 0.88607
Target:  5'- -gGCUGCCCCgUGuUCAGGgagcugagcgaGUUCCu -3'
miRNA:   3'- aaCGACGGGGgACuAGUUCa----------CAAGGu -5'
3598 5' -54.8 NC_001650.1 + 21768 0.68 0.878935
Target:  5'- cUGCggcGCCCCCUGGUgGGGgacgCCGg -3'
miRNA:   3'- aACGa--CGGGGGACUAgUUCacaaGGU- -5'
3598 5' -54.8 NC_001650.1 + 155929 0.68 0.863214
Target:  5'- -cGCUGCaCgCCCUGGUCAacuccggcuucgaGGUGU-CCGu -3'
miRNA:   3'- aaCGACG-G-GGGACUAGU-------------UCACAaGGU- -5'
3598 5' -54.8 NC_001650.1 + 29581 0.68 0.843259
Target:  5'- -cGCcGCCCCCUGGacgcugcgccugagCAGGUGgUCCGa -3'
miRNA:   3'- aaCGaCGGGGGACUa-------------GUUCACaAGGU- -5'
3598 5' -54.8 NC_001650.1 + 76921 0.68 0.839948
Target:  5'- -cGCaGCCCCCUGccgGUCAAGU--UCCu -3'
miRNA:   3'- aaCGaCGGGGGAC---UAGUUCAcaAGGu -5'
3598 5' -54.8 NC_001650.1 + 109145 0.71 0.728466
Target:  5'- -aGCUGCUCCCUGA---GGUGgcCCAg -3'
miRNA:   3'- aaCGACGGGGGACUaguUCACaaGGU- -5'
3598 5' -54.8 NC_001650.1 + 50587 0.72 0.656616
Target:  5'- -gGCcGCCCCCaccgUGGUCAGGUGcUCCc -3'
miRNA:   3'- aaCGaCGGGGG----ACUAGUUCACaAGGu -5'
3598 5' -54.8 NC_001650.1 + 148220 0.72 0.635766
Target:  5'- -aGCUGCCCCUucacaUGcgCAGcGUGUUCCu -3'
miRNA:   3'- aaCGACGGGGG-----ACuaGUU-CACAAGGu -5'
3598 5' -54.8 NC_001650.1 + 21948 1.06 0.005009
Target:  5'- gUUGCUGCCCCCUGAUCAAGUGUUCCAg -3'
miRNA:   3'- -AACGACGGGGGACUAGUUCACAAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.