miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 3' -65.9 NC_001650.1 + 35381 0.67 0.516233
Target:  5'- gGUGCugGUGUggggcaccaCCCCCGCgGCGCcUGGGGu -3'
miRNA:   3'- gCAUG--CGCG---------GGGGGCG-CGCG-ACCCCc -5'
3599 3' -65.9 NC_001650.1 + 110668 0.67 0.516233
Target:  5'- gCGcACGCGCCCCCUcggGCGaUGCcGGaccGGGa -3'
miRNA:   3'- -GCaUGCGCGGGGGG---CGC-GCGaCC---CCC- -5'
3599 3' -65.9 NC_001650.1 + 149734 0.67 0.510885
Target:  5'- gGUA-GCGCCuagcuggcuuuccucCCCUGgGC-CUGGGGGa -3'
miRNA:   3'- gCAUgCGCGG---------------GGGGCgCGcGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 131542 0.67 0.507333
Target:  5'- cCGgcCGgGCCCaCCCGCGgGUgcgucucGGGGa -3'
miRNA:   3'- -GCauGCgCGGG-GGGCGCgCGa------CCCCc -5'
3599 3' -65.9 NC_001650.1 + 143177 0.67 0.507333
Target:  5'- aCGUGCGaGaCCCUCUGC-UGCgGGGGGu -3'
miRNA:   3'- -GCAUGCgC-GGGGGGCGcGCGaCCCCC- -5'
3599 3' -65.9 NC_001650.1 + 61193 0.67 0.507333
Target:  5'- --aGgGUGCCCCugaCCGgGCGaugUGGGGGg -3'
miRNA:   3'- gcaUgCGCGGGG---GGCgCGCg--ACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 36020 0.67 0.507333
Target:  5'- uGgcCGCGCCCCCCuG-GCGC-GGGa- -3'
miRNA:   3'- gCauGCGCGGGGGG-CgCGCGaCCCcc -5'
3599 3' -65.9 NC_001650.1 + 130602 0.67 0.507333
Target:  5'- aGUGCGCGCCCacgagaCgGaCGaCG-UGGGGGu -3'
miRNA:   3'- gCAUGCGCGGGg-----GgC-GC-GCgACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 157261 0.67 0.506447
Target:  5'- --gGC-CGCCCCCuCGgggcuguagcccaUGCGcCUGGGGGg -3'
miRNA:   3'- gcaUGcGCGGGGG-GC-------------GCGC-GACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 164634 0.67 0.4985
Target:  5'- --aACGcCGCCCCgggCCGCGCggcacccggGCUcccGGGGGa -3'
miRNA:   3'- gcaUGC-GCGGGG---GGCGCG---------CGA---CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 109405 0.67 0.493234
Target:  5'- aCGUGCagaaGgGCCgCCCCGCGUacgGCUcgucccacucgggccGGGGGc -3'
miRNA:   3'- -GCAUG----CgCGG-GGGGCGCG---CGA---------------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 18197 0.67 0.48018
Target:  5'- ----aGCGCCCCCaCGUgggggGCGCUcuucuucacccccGGGGGu -3'
miRNA:   3'- gcaugCGCGGGGG-GCG-----CGCGA-------------CCCCC- -5'
3599 3' -65.9 NC_001650.1 + 72875 0.67 0.463892
Target:  5'- --gGCGCGUcuugaCCCUgGCGUGCUGGGu- -3'
miRNA:   3'- gcaUGCGCG-----GGGGgCGCGCGACCCcc -5'
3599 3' -65.9 NC_001650.1 + 110876 0.67 0.463892
Target:  5'- -cUACGgGCCCCuaucgccgccgCCGCgGCGacuggaUGGGGGg -3'
miRNA:   3'- gcAUGCgCGGGG-----------GGCG-CGCg-----ACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 23963 0.68 0.447064
Target:  5'- uCGgGCGggucucCGCCCCCCGCGCGCcGcGaGGa -3'
miRNA:   3'- -GCaUGC------GCGGGGGGCGCGCGaC-C-CCc -5'
3599 3' -65.9 NC_001650.1 + 156428 0.68 0.437955
Target:  5'- --cACGUGCCCCgggCCGUGCaGCucgggcgugagccUGGGGGc -3'
miRNA:   3'- gcaUGCGCGGGG---GGCGCG-CG-------------ACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 93242 0.68 0.430582
Target:  5'- --aACGCGCCCg-CGCGCGacaUGGaGGGg -3'
miRNA:   3'- gcaUGCGCGGGggGCGCGCg--ACC-CCC- -5'
3599 3' -65.9 NC_001650.1 + 109096 0.68 0.430582
Target:  5'- aCGUGCugaGCGUCCUggGCGUcCUGGGGGa -3'
miRNA:   3'- -GCAUG---CGCGGGGggCGCGcGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 136290 0.68 0.42814
Target:  5'- --gGC-CGCCCCcgccuucauggcggCCGCgGgGCUGGGGGa -3'
miRNA:   3'- gcaUGcGCGGGG--------------GGCG-CgCGACCCCC- -5'
3599 3' -65.9 NC_001650.1 + 69205 0.68 0.425707
Target:  5'- cCGUGCGCGUgcaaCUCgUGCGCGCgggcgcuggaggccGGGGGc -3'
miRNA:   3'- -GCAUGCGCG----GGGgGCGCGCGa-------------CCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.