miRNA display CGI


Results 121 - 140 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 50980 0.72 0.825415
Target:  5'- -cUGCCCGugugcgagcuGCGgGGGGACgGGGGCGCg -3'
miRNA:   3'- caGCGGGU----------UGUaUUUCUGgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 155261 0.72 0.825415
Target:  5'- -aCGCCCAGCAgggGAGGAuguuacCCGccAGGUGCc -3'
miRNA:   3'- caGCGGGUUGUa--UUUCU------GGC--UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 132978 0.72 0.825415
Target:  5'- cUCGCCCGcgcgGgAUAGAGACacgcugggagGGGGCGCg -3'
miRNA:   3'- cAGCGGGU----UgUAUUUCUGg---------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 121304 0.72 0.807945
Target:  5'- -cCGCCCGAgAUAGAGGgCGuGcGCGCc -3'
miRNA:   3'- caGCGGGUUgUAUUUCUgGCuC-CGCG- -5'
3599 5' -52.7 NC_001650.1 + 83516 0.72 0.807945
Target:  5'- -gCGCCCGAUaggugggagagGUGcAGGCaCGGGGCGCc -3'
miRNA:   3'- caGCGGGUUG-----------UAUuUCUG-GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 51012 0.72 0.833885
Target:  5'- -gUGCCCGAgAaGAAGACCuGGGGCuGCu -3'
miRNA:   3'- caGCGGGUUgUaUUUCUGG-CUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 6256 0.72 0.833885
Target:  5'- --gGCCCAAU--GGGGACCGAGGgGg -3'
miRNA:   3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 148169 0.72 0.816765
Target:  5'- cGUCGCgCGuACA---GGGCuCGAGGCGCu -3'
miRNA:   3'- -CAGCGgGU-UGUauuUCUG-GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 94827 0.72 0.807945
Target:  5'- -cCGCCCGAagcgAGAGACCGccaGGGCGa -3'
miRNA:   3'- caGCGGGUUgua-UUUCUGGC---UCCGCg -5'
3599 5' -52.7 NC_001650.1 + 172963 0.72 0.833885
Target:  5'- --gGCCCAAU--GGGGACCGAGGgGg -3'
miRNA:   3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 143114 0.73 0.771125
Target:  5'- aUCGCCCGagcgcgccggcuGCAc--GGGCCGGGGCGg -3'
miRNA:   3'- cAGCGGGU------------UGUauuUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 94466 0.73 0.771125
Target:  5'- -aCGCCCucGACc---AGACCGAGGCGg -3'
miRNA:   3'- caGCGGG--UUGuauuUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 132378 0.73 0.774908
Target:  5'- uGUCGCCCucggccgagcucuuuGACGgccuGGCCG-GGCGCg -3'
miRNA:   3'- -CAGCGGG---------------UUGUauuuCUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 177930 0.73 0.780543
Target:  5'- -cCGCCU---GUAAGGACCGAGGCu- -3'
miRNA:   3'- caGCGGGuugUAUUUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 127424 0.73 0.774908
Target:  5'- uGUCGgUCAGCAUGuccuccgccgcccggGAGACCGGGGC-Cg -3'
miRNA:   3'- -CAGCgGGUUGUAU---------------UUCUGGCUCCGcG- -5'
3599 5' -52.7 NC_001650.1 + 73377 0.73 0.771125
Target:  5'- --aGCCCcACA--AAGACCGAGGUGg -3'
miRNA:   3'- cagCGGGuUGUauUUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 11223 0.73 0.780543
Target:  5'- -cCGCCU---GUAAGGACCGAGGCu- -3'
miRNA:   3'- caGCGGGuugUAUUUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 79902 0.73 0.761581
Target:  5'- cUCGCCCGagacGCAggcccuGACCcAGGCGCa -3'
miRNA:   3'- cAGCGGGU----UGUauuu--CUGGcUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 125935 0.74 0.75192
Target:  5'- --gGCCCggUuuuucuGGCCGAGGCGCc -3'
miRNA:   3'- cagCGGGuuGuauuu-CUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 66917 0.74 0.732285
Target:  5'- --gGCCgGggaGCAU-GGGGCCGGGGCGCg -3'
miRNA:   3'- cagCGGgU---UGUAuUUCUGGCUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.