Results 41 - 60 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 85011 | 0.71 | 0.865822 |
Target: 5'- cGUCGgaCCCGACAUAc---CCGAGGUGUa -3' miRNA: 3'- -CAGC--GGGUUGUAUuucuGGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 46504 | 0.71 | 0.865822 |
Target: 5'- cUC-CCCGGCGUcgGGGCCGgcggcgaccGGGCGCc -3' miRNA: 3'- cAGcGGGUUGUAuuUCUGGC---------UCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 173605 | 0.71 | 0.88053 |
Target: 5'- uUgGCCCAAU--GGGGGCCGAGGgGg -3' miRNA: 3'- cAgCGGGUUGuaUUUCUGGCUCCgCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 143047 | 0.71 | 0.88053 |
Target: 5'- aUCGCgggCCAcGCGgAGGGcGCCGAGGCGCu -3' miRNA: 3'- cAGCG---GGU-UGUaUUUC-UGGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 99426 | 0.7 | 0.913287 |
Target: 5'- --aGCCCAcCAccGGGAccaCCGAGGUGCg -3' miRNA: 3'- cagCGGGUuGUauUUCU---GGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 182881 | 0.7 | 0.919123 |
Target: 5'- gGUUGCCCAAgGacucucaccUAGAGGCCagguguagcuauGGGGCGUg -3' miRNA: 3'- -CAGCGGGUUgU---------AUUUCUGG------------CUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 93444 | 0.7 | 0.907209 |
Target: 5'- uGUCGCgCGcgggcGCGUuucGGCCGuGGCGCg -3' miRNA: 3'- -CAGCGgGU-----UGUAuuuCUGGCuCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 23406 | 0.7 | 0.906588 |
Target: 5'- --gGCCCGGCGUcgcugcuguuguaGGGGACCcuggaGGGCGCg -3' miRNA: 3'- cagCGGGUUGUA-------------UUUCUGGc----UCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 133881 | 0.7 | 0.919123 |
Target: 5'- gGUCGCCUcuagaGGCcgccccuGGGACCGcGGCGCc -3' miRNA: 3'- -CAGCGGG-----UUGuau----UUCUGGCuCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 128208 | 0.7 | 0.913287 |
Target: 5'- aUCGCCCG----GGAGAgcaacuccuUCGAGGCGCu -3' miRNA: 3'- cAGCGGGUuguaUUUCU---------GGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 131546 | 0.7 | 0.894337 |
Target: 5'- -cCGCCCGGgGgcuGGACgCGGGGCGg -3' miRNA: 3'- caGCGGGUUgUauuUCUG-GCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 16174 | 0.7 | 0.919123 |
Target: 5'- gGUUGCCCAAgGacucucaccUAGAGGCCagguguagcuauGGGGCGUg -3' miRNA: 3'- -CAGCGGGUUgU---------AUUUCUGG------------CUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 154399 | 0.7 | 0.887548 |
Target: 5'- --aGCCCGGCucuaaGUGAcucuccAGGCgCGGGGCGCa -3' miRNA: 3'- cagCGGGUUG-----UAUU------UCUG-GCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 56606 | 0.7 | 0.900891 |
Target: 5'- -cUGCCUAGCGggGAAGAgCGAGG-GCg -3' miRNA: 3'- caGCGGGUUGUa-UUUCUgGCUCCgCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 6364 | 0.7 | 0.894337 |
Target: 5'- -cUGCCCAcucaaccccaugGCcaAUGAAGACCGGGGuUGCu -3' miRNA: 3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 89552 | 0.7 | 0.894337 |
Target: 5'- -gCGCCCAACAUGGAGcacgcgGCCcGGGC-Ca -3' miRNA: 3'- caGCGGGUUGUAUUUC------UGGcUCCGcG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 109207 | 0.7 | 0.900891 |
Target: 5'- --aGUCCAGCAccagguUGAAGACgGgcAGGCGCg -3' miRNA: 3'- cagCGGGUUGU------AUUUCUGgC--UCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 173071 | 0.7 | 0.894337 |
Target: 5'- -cUGCCCAcucaaccccaugGCcaAUGAAGACCGGGGuUGCu -3' miRNA: 3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 136080 | 0.7 | 0.887548 |
Target: 5'- -gCGgCCGcCAUGAAGGCgGGGGCGg -3' miRNA: 3'- caGCgGGUuGUAUUUCUGgCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 130846 | 0.7 | 0.907209 |
Target: 5'- -cCGCCCugcuGCucgaggccAAGACCGGGGgGCu -3' miRNA: 3'- caGCGGGu---UGuau-----UUCUGGCUCCgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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