Results 101 - 120 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 291 | 0.67 | 0.978355 |
Target: 5'- -gCGCCCcc--UGccGGCCGAGGCGa -3' miRNA: 3'- caGCGGGuuguAUuuCUGGCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 30408 | 0.67 | 0.978355 |
Target: 5'- uGUCuGCCC-GCAgAGGGcGCCcugGAGGCGCu -3' miRNA: 3'- -CAG-CGGGuUGUaUUUC-UGG---CUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 136616 | 0.67 | 0.970494 |
Target: 5'- --aGCCCAccGCccGGGGGCguCGGGGCGCc -3' miRNA: 3'- cagCGGGU--UGuaUUUCUG--GCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 36472 | 0.67 | 0.97593 |
Target: 5'- aUCcCCCAccuguucagGCA--GGGACCGGGGgGCa -3' miRNA: 3'- cAGcGGGU---------UGUauUUCUGGCUCCgCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 118187 | 0.67 | 0.973312 |
Target: 5'- --aGCCUAAagaacAGGCCGGGGaCGCa -3' miRNA: 3'- cagCGGGUUguauuUCUGGCUCC-GCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 75314 | 0.67 | 0.970494 |
Target: 5'- -gCGCCCcccuGCGgccgcGGA-CGAGGCGCg -3' miRNA: 3'- caGCGGGu---UGUauu--UCUgGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 100055 | 0.67 | 0.97593 |
Target: 5'- aGUC-CaCCAGCuccAAAGugacccCCGAGGCGCg -3' miRNA: 3'- -CAGcG-GGUUGua-UUUCu-----GGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 157969 | 0.67 | 0.967469 |
Target: 5'- uUUGCCCGugG-GAGGGCCGGacGCGCc -3' miRNA: 3'- cAGCGGGUugUaUUUCUGGCUc-CGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 102075 | 0.67 | 0.967469 |
Target: 5'- -cCGCCCGccuGCAcGGAGGCUGgauAGGCGg -3' miRNA: 3'- caGCGGGU---UGUaUUUCUGGC---UCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 164648 | 0.67 | 0.969906 |
Target: 5'- -cCGCgCGGCAcccgggcucccgGGGGACCGcGGCGCu -3' miRNA: 3'- caGCGgGUUGUa-----------UUUCUGGCuCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 130607 | 0.67 | 0.967469 |
Target: 5'- -gCGCCCAcgagacggacgACGUGGGGguccucACCGAGGC-Ca -3' miRNA: 3'- caGCGGGU-----------UGUAUUUC------UGGCUCCGcG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 22493 | 0.67 | 0.970201 |
Target: 5'- -cCGCCCGGCAU--GGGCCccgccucGAGGCc- -3' miRNA: 3'- caGCGGGUUGUAuuUCUGG-------CUCCGcg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 69224 | 0.67 | 0.970494 |
Target: 5'- -gCGCgCgGGCGcUGGAGGCCGGGG-GCg -3' miRNA: 3'- caGCG-GgUUGU-AUUUCUGGCUCCgCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 109501 | 0.67 | 0.970494 |
Target: 5'- gGUCGCCgGACA---AGGCCGccuacaucaGGGaCGCc -3' miRNA: 3'- -CAGCGGgUUGUauuUCUGGC---------UCC-GCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 155589 | 0.67 | 0.970494 |
Target: 5'- -cUGCaCCAGCccccUGGAGGCCGcguaguuGGCGCg -3' miRNA: 3'- caGCG-GGUUGu---AUUUCUGGCu------CCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 142698 | 0.67 | 0.97593 |
Target: 5'- -aCGUCCAGCAgcucGGAGGCCGccacGGGCc- -3' miRNA: 3'- caGCGGGUUGUa---UUUCUGGC----UCCGcg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 31728 | 0.67 | 0.967469 |
Target: 5'- -cCGCCCAuccc--AGACCGAcaaacuGGCGCc -3' miRNA: 3'- caGCGGGUuguauuUCUGGCU------CCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 53535 | 0.67 | 0.967469 |
Target: 5'- -cUGCCCGGCcgGguGAGAUCGGGGgGa -3' miRNA: 3'- caGCGGGUUGuaU--UUCUGGCUCCgCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 39792 | 0.67 | 0.967469 |
Target: 5'- gGUgGgCCAccGCGUGGAG-CCuGGGCGCa -3' miRNA: 3'- -CAgCgGGU--UGUAUUUCuGGcUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 78678 | 0.67 | 0.97593 |
Target: 5'- --gGCCUGGCG-GAGGACgCG-GGCGCa -3' miRNA: 3'- cagCGGGUUGUaUUUCUG-GCuCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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