miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 11449 0.7 0.919123
Target:  5'- cGUCGCCgCAGCGgca--GCCG-GGCGUg -3'
miRNA:   3'- -CAGCGG-GUUGUauuucUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 133881 0.7 0.919123
Target:  5'- gGUCGCCUcuagaGGCcgccccuGGGACCGcGGCGCc -3'
miRNA:   3'- -CAGCGGG-----UUGuau----UUCUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 76183 0.69 0.924716
Target:  5'- aUCuaCCAACAggUGGAGGCCGAG-UGCa -3'
miRNA:   3'- cAGcgGGUUGU--AUUUCUGGCUCcGCG- -5'
3599 5' -52.7 NC_001650.1 + 119914 0.69 0.924716
Target:  5'- cGUCGCCCAcGC-UGAAGGCgaacaCGAaGGUGCc -3'
miRNA:   3'- -CAGCGGGU-UGuAUUUCUG-----GCU-CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 22408 0.69 0.924716
Target:  5'- -aCGuCCCGAUcgAUAAAGACCcuggaggucGGGGCGUa -3'
miRNA:   3'- caGC-GGGUUG--UAUUUCUGG---------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 138477 0.69 0.924716
Target:  5'- uGUUGCCUggUucuccuGGCCGGGGUGUg -3'
miRNA:   3'- -CAGCGGGuuGuauuu-CUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 24093 0.69 0.926884
Target:  5'- cUUGCCCGgggaggcgggcagaaACAggauGACCGAGcGCGCc -3'
miRNA:   3'- cAGCGGGU---------------UGUauuuCUGGCUC-CGCG- -5'
3599 5' -52.7 NC_001650.1 + 146863 0.69 0.929541
Target:  5'- cGUCGCCCGGguUAAuccCCGAaguguggggaugcGGCGCa -3'
miRNA:   3'- -CAGCGGGUUguAUUucuGGCU-------------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 88508 0.69 0.930064
Target:  5'- -aCGCCgGGCGgGAGGaaGCgGGGGCGCc -3'
miRNA:   3'- caGCGGgUUGUaUUUC--UGgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 129711 0.69 0.930064
Target:  5'- --aGCUCAcggACAaagUGGAGGCCGAGGUGg -3'
miRNA:   3'- cagCGGGU---UGU---AUUUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 130737 0.69 0.932136
Target:  5'- cUCGCCCAGCAgcuccauccuccucuUGAGGGaggCGGGGCa- -3'
miRNA:   3'- cAGCGGGUUGU---------------AUUUCUg--GCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 17714 0.69 0.93467
Target:  5'- -gCGCCCGucgACAUuuGGGCCugagaaaauggagGGGGCGUg -3'
miRNA:   3'- caGCGGGU---UGUAuuUCUGG-------------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 184421 0.69 0.93467
Target:  5'- -gCGCCCGucgACAUuuGGGCCugagaaaauggagGGGGCGUg -3'
miRNA:   3'- caGCGGGU---UGUAuuUCUGG-------------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 122233 0.69 0.93517
Target:  5'- -gUGCCCGAgGccGGGGgCGAGGUGCc -3'
miRNA:   3'- caGCGGGUUgUauUUCUgGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 78638 0.69 0.93517
Target:  5'- --aGCCC-ACGUGGugcuGcCCGAGGCGUu -3'
miRNA:   3'- cagCGGGuUGUAUUu---CuGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 110333 0.69 0.940032
Target:  5'- aGUCgaGCUCGAaugAAGGAgUGAGGCGCu -3'
miRNA:   3'- -CAG--CGGGUUguaUUUCUgGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 138152 0.69 0.940032
Target:  5'- --aGCUCAAaacccuCAggguGAGGCUGAGGCGCu -3'
miRNA:   3'- cagCGGGUU------GUau--UUCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 57945 0.69 0.940032
Target:  5'- cGUCGCCCAccccGCG---AGGCCG-GGCa- -3'
miRNA:   3'- -CAGCGGGU----UGUauuUCUGGCuCCGcg -5'
3599 5' -52.7 NC_001650.1 + 116774 0.69 0.944653
Target:  5'- cUCGCaCUgAGCAUGcucugGAGACCGGGGCu- -3'
miRNA:   3'- cAGCG-GG-UUGUAU-----UUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 46341 0.69 0.944653
Target:  5'- -gCGCUCGGguUAAuccccgaGCCGGGGCGCg -3'
miRNA:   3'- caGCGGGUUguAUUuc-----UGGCUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.