Results 141 - 154 of 154 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 69047 | 0.66 | 0.985606 |
Target: 5'- -gCGCgCGGCAcgucccguCCGAGGCGCc -3' miRNA: 3'- caGCGgGUUGUauuucu--GGCUCCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 141565 | 0.66 | 0.98628 |
Target: 5'- cUCGCgCUAcuuccGCGUAGAGGaagCGAGGgGCg -3' miRNA: 3'- cAGCG-GGU-----UGUAUUUCUg--GCUCCgCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 165153 | 0.66 | 0.98628 |
Target: 5'- -gCGCCgGACcgGGGaGCCGGGGUGa -3' miRNA: 3'- caGCGGgUUGuaUUUcUGGCUCCGCg -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 35636 | 0.66 | 0.98628 |
Target: 5'- -gCGaCCCAGCAgcuUGAGGACCGuccCGCu -3' miRNA: 3'- caGC-GGGUUGU---AUUUCUGGCuccGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 58150 | 0.66 | 0.987858 |
Target: 5'- -cCGCCCAGC-UGAGGguGCCGcccccGGcCGCg -3' miRNA: 3'- caGCGGGUUGuAUUUC--UGGCu----CC-GCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 146153 | 0.66 | 0.987858 |
Target: 5'- cUCGCCCGGgcc--GGGCUGGGGCa- -3' miRNA: 3'- cAGCGGGUUguauuUCUGGCUCCGcg -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 82999 | 0.66 | 0.987858 |
Target: 5'- aUCGCCagggGGC-UGGAGGCgGAGGUGa -3' miRNA: 3'- cAGCGGg---UUGuAUUUCUGgCUCCGCg -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 1758 | 0.66 | 0.987858 |
Target: 5'- cUC-CCCAuuggcCAUGGAGGCCcuguggGAGGUGCc -3' miRNA: 3'- cAGcGGGUu----GUAUUUCUGG------CUCCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 168465 | 0.66 | 0.987858 |
Target: 5'- cUC-CCCAuuggcCAUGGAGGCCcuguggGAGGUGCc -3' miRNA: 3'- cAGcGGGUu----GUAUUUCUGG------CUCCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 129134 | 0.66 | 0.989293 |
Target: 5'- -gCGCCCGGgGccGAGGACaCGGGG-GCg -3' miRNA: 3'- caGCGGGUUgUa-UUUCUG-GCUCCgCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 129973 | 0.66 | 0.989293 |
Target: 5'- -gCGCCCGugGcgcGGGCCcuGAGGCuGCu -3' miRNA: 3'- caGCGGGUugUauuUCUGG--CUCCG-CG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 118548 | 0.66 | 0.989293 |
Target: 5'- -cUGCCgAGCGcau-GACCGGgguGGCGCa -3' miRNA: 3'- caGCGGgUUGUauuuCUGGCU---CCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 131772 | 0.66 | 0.989293 |
Target: 5'- --gGCCCGAgGU--GGACCacuugaAGGCGCu -3' miRNA: 3'- cagCGGGUUgUAuuUCUGGc-----UCCGCG- -5' |
|||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 135600 | 0.66 | 0.989293 |
Target: 5'- -cCGCCaguAUAUAAGGGCgGuGGGUGCc -3' miRNA: 3'- caGCGGgu-UGUAUUUCUGgC-UCCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home