miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 51525 0.68 0.96423
Target:  5'- --gGCCCAgccacuggccacGCAgAGGGACUGAGGCuGUg -3'
miRNA:   3'- cagCGGGU------------UGUaUUUCUGGCUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 171451 0.68 0.96423
Target:  5'- -gUGCCCGGCucgggGAAGACCuAGGC-Cg -3'
miRNA:   3'- caGCGGGUUGua---UUUCUGGcUCCGcG- -5'
3599 5' -52.7 NC_001650.1 + 4744 0.68 0.96423
Target:  5'- -gUGCCCGGCucgggGAAGACCuAGGC-Cg -3'
miRNA:   3'- caGCGGGUUGua---UUUCUGGcUCCGcG- -5'
3599 5' -52.7 NC_001650.1 + 22575 0.68 0.960772
Target:  5'- uGUCGCCCGucc--GGGGCgGcGGCGCc -3'
miRNA:   3'- -CAGCGGGUuguauUUCUGgCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 59748 0.68 0.960772
Target:  5'- --gGCCCGugGcccccGGGGgCGAGGCGCc -3'
miRNA:   3'- cagCGGGUugUau---UUCUgGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 59023 0.68 0.960772
Target:  5'- --gGCCCGAUcccauugaauGUGGAGcACCuucagGAGGCGCa -3'
miRNA:   3'- cagCGGGUUG----------UAUUUC-UGG-----CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 142974 0.68 0.959691
Target:  5'- -cCGCCCuggggaAACGcccUGGAGACCGccuccgcaaacuccGGGCGCc -3'
miRNA:   3'- caGCGGG------UUGU---AUUUCUGGC--------------UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 121059 0.68 0.95709
Target:  5'- -aCGCCCuGCccGGGGacGCCGcGGCGCg -3'
miRNA:   3'- caGCGGGuUGuaUUUC--UGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 45984 0.68 0.95709
Target:  5'- -gCGCgCCGAUu----GGCCGAGaGCGCa -3'
miRNA:   3'- caGCG-GGUUGuauuuCUGGCUC-CGCG- -5'
3599 5' -52.7 NC_001650.1 + 79051 0.68 0.956709
Target:  5'- --aGCCCucuggagAGgAUAgcGGCCGAGGCGUc -3'
miRNA:   3'- cagCGGG-------UUgUAUuuCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 82555 0.68 0.953179
Target:  5'- -cUGCCCAacuACAUGuaccGGcccGCCGAGGaCGCg -3'
miRNA:   3'- caGCGGGU---UGUAUu---UC---UGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 118036 0.68 0.949034
Target:  5'- -cUGCCC-GCGUGccuGAGGgCGAGGgGCg -3'
miRNA:   3'- caGCGGGuUGUAU---UUCUgGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 29062 0.68 0.949034
Target:  5'- -gUGgCCGACGUGGGGgaguACCuGGGCGCg -3'
miRNA:   3'- caGCgGGUUGUAUUUC----UGGcUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 75851 0.68 0.949034
Target:  5'- cUCGCUUcucUAUAAAGuCUGGGGCGCu -3'
miRNA:   3'- cAGCGGGuu-GUAUUUCuGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 116774 0.69 0.944653
Target:  5'- cUCGCaCUgAGCAUGcucugGAGACCGGGGCu- -3'
miRNA:   3'- cAGCG-GG-UUGUAU-----UUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 46341 0.69 0.944653
Target:  5'- -gCGCUCGGguUAAuccccgaGCCGGGGCGCg -3'
miRNA:   3'- caGCGGGUUguAUUuc-----UGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 110333 0.69 0.940032
Target:  5'- aGUCgaGCUCGAaugAAGGAgUGAGGCGCu -3'
miRNA:   3'- -CAG--CGGGUUguaUUUCUgGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 138152 0.69 0.940032
Target:  5'- --aGCUCAAaacccuCAggguGAGGCUGAGGCGCu -3'
miRNA:   3'- cagCGGGUU------GUau--UUCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 57945 0.69 0.940032
Target:  5'- cGUCGCCCAccccGCG---AGGCCG-GGCa- -3'
miRNA:   3'- -CAGCGGGU----UGUauuUCUGGCuCCGcg -5'
3599 5' -52.7 NC_001650.1 + 122233 0.69 0.93517
Target:  5'- -gUGCCCGAgGccGGGGgCGAGGUGCc -3'
miRNA:   3'- caGCGGGUUgUauUUCUgGCUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.