miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 130846 0.7 0.907209
Target:  5'- -cCGCCCugcuGCucgaggccAAGACCGGGGgGCu -3'
miRNA:   3'- caGCGGGu---UGuau-----UUCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 23406 0.7 0.906588
Target:  5'- --gGCCCGGCGUcgcugcuguuguaGGGGACCcuggaGGGCGCg -3'
miRNA:   3'- cagCGGGUUGUA-------------UUUCUGGc----UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 56606 0.7 0.900891
Target:  5'- -cUGCCUAGCGggGAAGAgCGAGG-GCg -3'
miRNA:   3'- caGCGGGUUGUa-UUUCUgGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 109207 0.7 0.900891
Target:  5'- --aGUCCAGCAccagguUGAAGACgGgcAGGCGCg -3'
miRNA:   3'- cagCGGGUUGU------AUUUCUGgC--UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 131546 0.7 0.894337
Target:  5'- -cCGCCCGGgGgcuGGACgCGGGGCGg -3'
miRNA:   3'- caGCGGGUUgUauuUCUG-GCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 6364 0.7 0.894337
Target:  5'- -cUGCCCAcucaaccccaugGCcaAUGAAGACCGGGGuUGCu -3'
miRNA:   3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 173071 0.7 0.894337
Target:  5'- -cUGCCCAcucaaccccaugGCcaAUGAAGACCGGGGuUGCu -3'
miRNA:   3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 89552 0.7 0.894337
Target:  5'- -gCGCCCAACAUGGAGcacgcgGCCcGGGC-Ca -3'
miRNA:   3'- caGCGGGUUGUAUUUC------UGGcUCCGcG- -5'
3599 5' -52.7 NC_001650.1 + 154399 0.7 0.887548
Target:  5'- --aGCCCGGCucuaaGUGAcucuccAGGCgCGGGGCGCa -3'
miRNA:   3'- cagCGGGUUG-----UAUU------UCUG-GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 136080 0.7 0.887548
Target:  5'- -gCGgCCGcCAUGAAGGCgGGGGCGg -3'
miRNA:   3'- caGCgGGUuGUAUUUCUGgCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 173605 0.71 0.88053
Target:  5'- uUgGCCCAAU--GGGGGCCGAGGgGg -3'
miRNA:   3'- cAgCGGGUUGuaUUUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 143047 0.71 0.88053
Target:  5'- aUCGCgggCCAcGCGgAGGGcGCCGAGGCGCu -3'
miRNA:   3'- cAGCG---GGU-UGUaUUUC-UGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 60600 0.71 0.88053
Target:  5'- -cCGCCCGAa--AAAGuCUGGGGCGUa -3'
miRNA:   3'- caGCGGGUUguaUUUCuGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 6898 0.71 0.88053
Target:  5'- uUgGCCCAAU--GGGGGCCGAGGgGg -3'
miRNA:   3'- cAgCGGGUUGuaUUUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 46504 0.71 0.865822
Target:  5'- cUC-CCCGGCGUcgGGGCCGgcggcgaccGGGCGCc -3'
miRNA:   3'- cAGcGGGUUGUAuuUCUGGC---------UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 85011 0.71 0.865822
Target:  5'- cGUCGgaCCCGACAUAc---CCGAGGUGUa -3'
miRNA:   3'- -CAGC--GGGUUGUAUuucuGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 129869 0.71 0.865822
Target:  5'- --aGCUCAACcgGcAGGCCGAGGcCGUg -3'
miRNA:   3'- cagCGGGUUGuaUuUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 114735 0.71 0.858144
Target:  5'- gGUC-CCCAgauACAuuUAAGGAaaucCCGGGGCGCu -3'
miRNA:   3'- -CAGcGGGU---UGU--AUUUCU----GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 57482 0.72 0.842168
Target:  5'- --aGCCCGAgGgaggGGAGGCaugCGGGGCGCa -3'
miRNA:   3'- cagCGGGUUgUa---UUUCUG---GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 6256 0.72 0.833885
Target:  5'- --gGCCCAAU--GGGGACCGAGGgGg -3'
miRNA:   3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.