Results 121 - 140 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 172963 | 0.72 | 0.833885 |
Target: 5'- --gGCCCAAU--GGGGACCGAGGgGg -3' miRNA: 3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 6256 | 0.72 | 0.833885 |
Target: 5'- --gGCCCAAU--GGGGACCGAGGgGg -3' miRNA: 3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 132978 | 0.72 | 0.825415 |
Target: 5'- cUCGCCCGcgcgGgAUAGAGACacgcugggagGGGGCGCg -3' miRNA: 3'- cAGCGGGU----UgUAUUUCUGg---------CUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 155261 | 0.72 | 0.825415 |
Target: 5'- -aCGCCCAGCAgggGAGGAuguuacCCGccAGGUGCc -3' miRNA: 3'- caGCGGGUUGUa--UUUCU------GGC--UCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 50980 | 0.72 | 0.825415 |
Target: 5'- -cUGCCCGugugcgagcuGCGgGGGGACgGGGGCGCg -3' miRNA: 3'- caGCGGGU----------UGUaUUUCUGgCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 30552 | 0.72 | 0.816765 |
Target: 5'- aUCGUUCAACAgagaaagAGAGACCGucuucucGGCGCc -3' miRNA: 3'- cAGCGGGUUGUa------UUUCUGGCu------CCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 148169 | 0.72 | 0.816765 |
Target: 5'- cGUCGCgCGuACA---GGGCuCGAGGCGCu -3' miRNA: 3'- -CAGCGgGU-UGUauuUCUG-GCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 94827 | 0.72 | 0.807945 |
Target: 5'- -cCGCCCGAagcgAGAGACCGccaGGGCGa -3' miRNA: 3'- caGCGGGUUgua-UUUCUGGC---UCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 83516 | 0.72 | 0.807945 |
Target: 5'- -gCGCCCGAUaggugggagagGUGcAGGCaCGGGGCGCc -3' miRNA: 3'- caGCGGGUUG-----------UAUuUCUG-GCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 121304 | 0.72 | 0.807945 |
Target: 5'- -cCGCCCGAgAUAGAGGgCGuGcGCGCc -3' miRNA: 3'- caGCGGGUUgUAUUUCUgGCuC-CGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 177930 | 0.73 | 0.780543 |
Target: 5'- -cCGCCU---GUAAGGACCGAGGCu- -3' miRNA: 3'- caGCGGGuugUAUUUCUGGCUCCGcg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 11223 | 0.73 | 0.780543 |
Target: 5'- -cCGCCU---GUAAGGACCGAGGCu- -3' miRNA: 3'- caGCGGGuugUAUUUCUGGCUCCGcg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 132378 | 0.73 | 0.774908 |
Target: 5'- uGUCGCCCucggccgagcucuuuGACGgccuGGCCG-GGCGCg -3' miRNA: 3'- -CAGCGGG---------------UUGUauuuCUGGCuCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 127424 | 0.73 | 0.774908 |
Target: 5'- uGUCGgUCAGCAUGuccuccgccgcccggGAGACCGGGGC-Cg -3' miRNA: 3'- -CAGCgGGUUGUAU---------------UUCUGGCUCCGcG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 94466 | 0.73 | 0.771125 |
Target: 5'- -aCGCCCucGACc---AGACCGAGGCGg -3' miRNA: 3'- caGCGGG--UUGuauuUCUGGCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 73377 | 0.73 | 0.771125 |
Target: 5'- --aGCCCcACA--AAGACCGAGGUGg -3' miRNA: 3'- cagCGGGuUGUauUUCUGGCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 143114 | 0.73 | 0.771125 |
Target: 5'- aUCGCCCGagcgcgccggcuGCAc--GGGCCGGGGCGg -3' miRNA: 3'- cAGCGGGU------------UGUauuUCUGGCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 79902 | 0.73 | 0.761581 |
Target: 5'- cUCGCCCGagacGCAggcccuGACCcAGGCGCa -3' miRNA: 3'- cAGCGGGU----UGUauuu--CUGGcUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 125935 | 0.74 | 0.75192 |
Target: 5'- --gGCCCggUuuuucuGGCCGAGGCGCc -3' miRNA: 3'- cagCGGGuuGuauuu-CUGGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 111092 | 0.74 | 0.741169 |
Target: 5'- aGUCGCCgCGGCGgcggcgaUAGGGGCCcguagcugaaaaGGGGCGCa -3' miRNA: 3'- -CAGCGG-GUUGU-------AUUUCUGG------------CUCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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