miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 78678 0.67 0.97593
Target:  5'- --gGCCUGGCG-GAGGACgCG-GGCGCa -3'
miRNA:   3'- cagCGGGUUGUaUUUCUG-GCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 79051 0.68 0.956709
Target:  5'- --aGCCCucuggagAGgAUAgcGGCCGAGGCGUc -3'
miRNA:   3'- cagCGGG-------UUgUAUuuCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 79602 0.66 0.982657
Target:  5'- -cCGCCCGGgGgcgcGA-CGGGGCGCg -3'
miRNA:   3'- caGCGGGUUgUauuuCUgGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 79902 0.73 0.761581
Target:  5'- cUCGCCCGagacGCAggcccuGACCcAGGCGCa -3'
miRNA:   3'- cAGCGGGU----UGUauuu--CUGGcUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 80243 0.66 0.982458
Target:  5'- -cCGCCUucuACGUGAacGGGCUgcugcugGAGGCGUg -3'
miRNA:   3'- caGCGGGu--UGUAUU--UCUGG-------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 81597 0.82 0.310778
Target:  5'- gGUCGCCCGACGcGAGGucGCCGcacaGGGCGCg -3'
miRNA:   3'- -CAGCGGGUUGUaUUUC--UGGC----UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 82555 0.68 0.953179
Target:  5'- -cUGCCCAacuACAUGuaccGGcccGCCGAGGaCGCg -3'
miRNA:   3'- caGCGGGU---UGUAUu---UC---UGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 82999 0.66 0.987858
Target:  5'- aUCGCCagggGGC-UGGAGGCgGAGGUGa -3'
miRNA:   3'- cAGCGGg---UUGuAUUUCUGgCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 83516 0.72 0.807945
Target:  5'- -gCGCCCGAUaggugggagagGUGcAGGCaCGGGGCGCc -3'
miRNA:   3'- caGCGGGUUG-----------UAUuUCUG-GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 85011 0.71 0.865822
Target:  5'- cGUCGgaCCCGACAUAc---CCGAGGUGUa -3'
miRNA:   3'- -CAGC--GGGUUGUAUuucuGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 88508 0.69 0.930064
Target:  5'- -aCGCCgGGCGgGAGGaaGCgGGGGCGCc -3'
miRNA:   3'- caGCGGgUUGUaUUUC--UGgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 89552 0.7 0.894337
Target:  5'- -gCGCCCAACAUGGAGcacgcgGCCcGGGC-Ca -3'
miRNA:   3'- caGCGGGUUGUAUUUC------UGGcUCCGcG- -5'
3599 5' -52.7 NC_001650.1 + 92492 0.66 0.984549
Target:  5'- -aCGUCCAucuACAUcccGGAcuuuuCCGAGGUGCa -3'
miRNA:   3'- caGCGGGU---UGUAuu-UCU-----GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 93444 0.7 0.907209
Target:  5'- uGUCGCgCGcgggcGCGUuucGGCCGuGGCGCg -3'
miRNA:   3'- -CAGCGgGU-----UGUAuuuCUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 94466 0.73 0.771125
Target:  5'- -aCGCCCucGACc---AGACCGAGGCGg -3'
miRNA:   3'- caGCGGG--UUGuauuUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 94827 0.72 0.807945
Target:  5'- -cCGCCCGAagcgAGAGACCGccaGGGCGa -3'
miRNA:   3'- caGCGGGUUgua-UUUCUGGC---UCCGCg -5'
3599 5' -52.7 NC_001650.1 + 96461 0.66 0.984549
Target:  5'- gGUCGCcacCCAGgAUGAccagcGACCcgGGGGCGCc -3'
miRNA:   3'- -CAGCG---GGUUgUAUUu----CUGG--CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 99426 0.7 0.913287
Target:  5'- --aGCCCAcCAccGGGAccaCCGAGGUGCg -3'
miRNA:   3'- cagCGGGUuGUauUUCU---GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 100055 0.67 0.97593
Target:  5'- aGUC-CaCCAGCuccAAAGugacccCCGAGGCGCg -3'
miRNA:   3'- -CAGcG-GGUUGua-UUUCu-----GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 100314 0.66 0.982657
Target:  5'- aUCGCggCGGCGUGcGAGGCCGuccgcAGGUGCg -3'
miRNA:   3'- cAGCGg-GUUGUAU-UUCUGGC-----UCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.