miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 102075 0.67 0.967469
Target:  5'- -cCGCCCGccuGCAcGGAGGCUGgauAGGCGg -3'
miRNA:   3'- caGCGGGU---UGUaUUUCUGGC---UCCGCg -5'
3599 5' -52.7 NC_001650.1 + 107656 0.67 0.978355
Target:  5'- -aUGCCUgccGGCcaAGAGGCCcuGGGGCGCg -3'
miRNA:   3'- caGCGGG---UUGuaUUUCUGG--CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 108892 0.76 0.61376
Target:  5'- aGUCGCCCAGCGcGGccagguccagcAGGCCGugcaggucgggggacAGGCGCg -3'
miRNA:   3'- -CAGCGGGUUGUaUU-----------UCUGGC---------------UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 109207 0.7 0.900891
Target:  5'- --aGUCCAGCAccagguUGAAGACgGgcAGGCGCg -3'
miRNA:   3'- cagCGGGUUGU------AUUUCUGgC--UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 109392 0.66 0.982853
Target:  5'- -cCGCCCcGCGUAcggcucgucccacucGGGCCGGGG-GCa -3'
miRNA:   3'- caGCGGGuUGUAUu--------------UCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 109501 0.67 0.970494
Target:  5'- gGUCGCCgGACA---AGGCCGccuacaucaGGGaCGCc -3'
miRNA:   3'- -CAGCGGgUUGUauuUCUGGC---------UCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 110333 0.69 0.940032
Target:  5'- aGUCgaGCUCGAaugAAGGAgUGAGGCGCu -3'
miRNA:   3'- -CAG--CGGGUUguaUUUCUgGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 111092 0.74 0.741169
Target:  5'- aGUCGCCgCGGCGgcggcgaUAGGGGCCcguagcugaaaaGGGGCGCa -3'
miRNA:   3'- -CAGCGG-GUUGU-------AUUUCUGG------------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 111153 0.66 0.982657
Target:  5'- --gGCCCucuCAgggAGGGugUGAGGCGg -3'
miRNA:   3'- cagCGGGuu-GUa--UUUCugGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 114735 0.71 0.858144
Target:  5'- gGUC-CCCAgauACAuuUAAGGAaaucCCGGGGCGCu -3'
miRNA:   3'- -CAGcGGGU---UGU--AUUUCU----GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 116774 0.69 0.944653
Target:  5'- cUCGCaCUgAGCAUGcucugGAGACCGGGGCu- -3'
miRNA:   3'- cAGCG-GG-UUGUAU-----UUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 118036 0.68 0.949034
Target:  5'- -cUGCCC-GCGUGccuGAGGgCGAGGgGCg -3'
miRNA:   3'- caGCGGGuUGUAU---UUCUgGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 118187 0.67 0.973312
Target:  5'- --aGCCUAAagaacAGGCCGGGGaCGCa -3'
miRNA:   3'- cagCGGGUUguauuUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 118548 0.66 0.989293
Target:  5'- -cUGCCgAGCGcau-GACCGGgguGGCGCa -3'
miRNA:   3'- caGCGGgUUGUauuuCUGGCU---CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 119324 0.68 0.96423
Target:  5'- --aGCCCAGCAUGcAGACCGcucccaGGGUc- -3'
miRNA:   3'- cagCGGGUUGUAUuUCUGGC------UCCGcg -5'
3599 5' -52.7 NC_001650.1 + 119844 0.66 0.98526
Target:  5'- -gCGCCCAgcccgcagacccugaACAgggagaccgggcUGAAGAugguguccaCCGAGGUGCa -3'
miRNA:   3'- caGCGGGU---------------UGU------------AUUUCU---------GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 119914 0.69 0.924716
Target:  5'- cGUCGCCCAcGC-UGAAGGCgaacaCGAaGGUGCc -3'
miRNA:   3'- -CAGCGGGU-UGuAUUUCUG-----GCU-CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 120594 0.66 0.984549
Target:  5'- gGUCGCUCAGacuucucAGAGACagCGGGGCGg -3'
miRNA:   3'- -CAGCGGGUUgua----UUUCUG--GCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 121059 0.68 0.95709
Target:  5'- -aCGCCCuGCccGGGGacGCCGcGGCGCg -3'
miRNA:   3'- caGCGGGuUGuaUUUC--UGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 121245 0.77 0.5574
Target:  5'- cGUCGUCCAcCAUGGAGAagauuucCCG-GGCGCg -3'
miRNA:   3'- -CAGCGGGUuGUAUUUCU-------GGCuCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.