miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 121304 0.72 0.807945
Target:  5'- -cCGCCCGAgAUAGAGGgCGuGcGCGCc -3'
miRNA:   3'- caGCGGGUUgUAUUUCUgGCuC-CGCG- -5'
3599 5' -52.7 NC_001650.1 + 122233 0.69 0.93517
Target:  5'- -gUGCCCGAgGccGGGGgCGAGGUGCc -3'
miRNA:   3'- caGCGGGUUgUauUUCUgGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 125935 0.74 0.75192
Target:  5'- --gGCCCggUuuuucuGGCCGAGGCGCc -3'
miRNA:   3'- cagCGGGuuGuauuu-CUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 127424 0.73 0.774908
Target:  5'- uGUCGgUCAGCAUGuccuccgccgcccggGAGACCGGGGC-Cg -3'
miRNA:   3'- -CAGCgGGUUGUAU---------------UUCUGGCUCCGcG- -5'
3599 5' -52.7 NC_001650.1 + 128208 0.7 0.913287
Target:  5'- aUCGCCCG----GGAGAgcaacuccuUCGAGGCGCu -3'
miRNA:   3'- cAGCGGGUuguaUUUCU---------GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 129134 0.66 0.989293
Target:  5'- -gCGCCCGGgGccGAGGACaCGGGG-GCg -3'
miRNA:   3'- caGCGGGUUgUa-UUUCUG-GCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 129711 0.69 0.930064
Target:  5'- --aGCUCAcggACAaagUGGAGGCCGAGGUGg -3'
miRNA:   3'- cagCGGGU---UGU---AUUUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 129869 0.71 0.865822
Target:  5'- --aGCUCAACcgGcAGGCCGAGGcCGUg -3'
miRNA:   3'- cagCGGGUUGuaUuUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 129973 0.66 0.989293
Target:  5'- -gCGCCCGugGcgcGGGCCcuGAGGCuGCu -3'
miRNA:   3'- caGCGGGUugUauuUCUGG--CUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 130607 0.67 0.967469
Target:  5'- -gCGCCCAcgagacggacgACGUGGGGguccucACCGAGGC-Ca -3'
miRNA:   3'- caGCGGGU-----------UGUAUUUC------UGGCUCCGcG- -5'
3599 5' -52.7 NC_001650.1 + 130737 0.69 0.932136
Target:  5'- cUCGCCCAGCAgcuccauccuccucuUGAGGGaggCGGGGCa- -3'
miRNA:   3'- cAGCGGGUUGU---------------AUUUCUg--GCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 130846 0.7 0.907209
Target:  5'- -cCGCCCugcuGCucgaggccAAGACCGGGGgGCu -3'
miRNA:   3'- caGCGGGu---UGuau-----UUCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 131469 0.66 0.982657
Target:  5'- -cCGCgCCAGCA---GGAUCGGGuccGCGCg -3'
miRNA:   3'- caGCG-GGUUGUauuUCUGGCUC---CGCG- -5'
3599 5' -52.7 NC_001650.1 + 131546 0.7 0.894337
Target:  5'- -cCGCCCGGgGgcuGGACgCGGGGCGg -3'
miRNA:   3'- caGCGGGUUgUauuUCUG-GCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 131772 0.66 0.989293
Target:  5'- --gGCCCGAgGU--GGACCacuugaAGGCGCu -3'
miRNA:   3'- cagCGGGUUgUAuuUCUGGc-----UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 132378 0.73 0.774908
Target:  5'- uGUCGCCCucggccgagcucuuuGACGgccuGGCCG-GGCGCg -3'
miRNA:   3'- -CAGCGGG---------------UUGUauuuCUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 132479 0.66 0.984549
Target:  5'- cUCGCCCccuGAguUAGuuuuugGGGCCcaGGGGCGCu -3'
miRNA:   3'- cAGCGGG---UUguAUU------UCUGG--CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 132978 0.72 0.825415
Target:  5'- cUCGCCCGcgcgGgAUAGAGACacgcugggagGGGGCGCg -3'
miRNA:   3'- cAGCGGGU----UgUAUUUCUGg---------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 133881 0.7 0.919123
Target:  5'- gGUCGCCUcuagaGGCcgccccuGGGACCGcGGCGCc -3'
miRNA:   3'- -CAGCGGG-----UUGuau----UUCUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 135600 0.66 0.989293
Target:  5'- -cCGCCaguAUAUAAGGGCgGuGGGUGCc -3'
miRNA:   3'- caGCGGgu-UGUAUUUCUGgC-UCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.