miRNA display CGI


Results 121 - 140 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 136080 0.7 0.887548
Target:  5'- -gCGgCCGcCAUGAAGGCgGGGGCGg -3'
miRNA:   3'- caGCgGGUuGUAUUUCUGgCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 136616 0.67 0.970494
Target:  5'- --aGCCCAccGCccGGGGGCguCGGGGCGCc -3'
miRNA:   3'- cagCGGGU--UGuaUUUCUG--GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 138152 0.69 0.940032
Target:  5'- --aGCUCAAaacccuCAggguGAGGCUGAGGCGCu -3'
miRNA:   3'- cagCGGGUU------GUau--UUCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 138477 0.69 0.924716
Target:  5'- uGUUGCCUggUucuccuGGCCGGGGUGUg -3'
miRNA:   3'- -CAGCGGGuuGuauuu-CUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 141465 0.67 0.978355
Target:  5'- cUCGCCgCcGCG---GGGCCGAGG-GCg -3'
miRNA:   3'- cAGCGG-GuUGUauuUCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 141565 0.66 0.98628
Target:  5'- cUCGCgCUAcuuccGCGUAGAGGaagCGAGGgGCg -3'
miRNA:   3'- cAGCG-GGU-----UGUAUUUCUg--GCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 142698 0.67 0.97593
Target:  5'- -aCGUCCAGCAgcucGGAGGCCGccacGGGCc- -3'
miRNA:   3'- caGCGGGUUGUa---UUUCUGGC----UCCGcg -5'
3599 5' -52.7 NC_001650.1 + 142974 0.68 0.959691
Target:  5'- -cCGCCCuggggaAACGcccUGGAGACCGccuccgcaaacuccGGGCGCc -3'
miRNA:   3'- caGCGGG------UUGU---AUUUCUGGC--------------UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 143047 0.71 0.88053
Target:  5'- aUCGCgggCCAcGCGgAGGGcGCCGAGGCGCu -3'
miRNA:   3'- cAGCG---GGU-UGUaUUUC-UGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 143114 0.73 0.771125
Target:  5'- aUCGCCCGagcgcgccggcuGCAc--GGGCCGGGGCGg -3'
miRNA:   3'- cAGCGGGU------------UGUauuUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 146153 0.66 0.987858
Target:  5'- cUCGCCCGGgcc--GGGCUGGGGCa- -3'
miRNA:   3'- cAGCGGGUUguauuUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 146863 0.69 0.929541
Target:  5'- cGUCGCCCGGguUAAuccCCGAaguguggggaugcGGCGCa -3'
miRNA:   3'- -CAGCGGGUUguAUUucuGGCU-------------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 148169 0.72 0.816765
Target:  5'- cGUCGCgCGuACA---GGGCuCGAGGCGCu -3'
miRNA:   3'- -CAGCGgGU-UGUauuUCUG-GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 154399 0.7 0.887548
Target:  5'- --aGCCCGGCucuaaGUGAcucuccAGGCgCGGGGCGCa -3'
miRNA:   3'- cagCGGGUUG-----UAUU------UCUG-GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 155261 0.72 0.825415
Target:  5'- -aCGCCCAGCAgggGAGGAuguuacCCGccAGGUGCc -3'
miRNA:   3'- caGCGGGUUGUa--UUUCU------GGC--UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 155589 0.67 0.970494
Target:  5'- -cUGCaCCAGCccccUGGAGGCCGcguaguuGGCGCg -3'
miRNA:   3'- caGCG-GGUUGu---AUUUCUGGCu------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 157969 0.67 0.967469
Target:  5'- uUUGCCCGugG-GAGGGCCGGacGCGCc -3'
miRNA:   3'- cAGCGGGUugUaUUUCUGGCUc-CGCG- -5'
3599 5' -52.7 NC_001650.1 + 158281 0.75 0.670529
Target:  5'- -aUGCCCAgggGCAUGGcguugucGGGCCGGGGCaGCa -3'
miRNA:   3'- caGCGGGU---UGUAUU-------UCUGGCUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 164401 0.79 0.469935
Target:  5'- cUCGCCCAGCcugAGAGACaggcgCGGGGCGUg -3'
miRNA:   3'- cAGCGGGUUGua-UUUCUG-----GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 164648 0.67 0.969906
Target:  5'- -cCGCgCGGCAcccgggcucccgGGGGACCGcGGCGCu -3'
miRNA:   3'- caGCGgGUUGUa-----------UUUCUGGCuCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.