Results 61 - 80 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 118548 | 0.66 | 0.989293 |
Target: 5'- -cUGCCgAGCGcau-GACCGGgguGGCGCa -3' miRNA: 3'- caGCGGgUUGUauuuCUGGCU---CCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 118187 | 0.67 | 0.973312 |
Target: 5'- --aGCCUAAagaacAGGCCGGGGaCGCa -3' miRNA: 3'- cagCGGGUUguauuUCUGGCUCC-GCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 118036 | 0.68 | 0.949034 |
Target: 5'- -cUGCCC-GCGUGccuGAGGgCGAGGgGCg -3' miRNA: 3'- caGCGGGuUGUAU---UUCUgGCUCCgCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 116774 | 0.69 | 0.944653 |
Target: 5'- cUCGCaCUgAGCAUGcucugGAGACCGGGGCu- -3' miRNA: 3'- cAGCG-GG-UUGUAU-----UUCUGGCUCCGcg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 114735 | 0.71 | 0.858144 |
Target: 5'- gGUC-CCCAgauACAuuUAAGGAaaucCCGGGGCGCu -3' miRNA: 3'- -CAGcGGGU---UGU--AUUUCU----GGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 111153 | 0.66 | 0.982657 |
Target: 5'- --gGCCCucuCAgggAGGGugUGAGGCGg -3' miRNA: 3'- cagCGGGuu-GUa--UUUCugGCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 111092 | 0.74 | 0.741169 |
Target: 5'- aGUCGCCgCGGCGgcggcgaUAGGGGCCcguagcugaaaaGGGGCGCa -3' miRNA: 3'- -CAGCGG-GUUGU-------AUUUCUGG------------CUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 110333 | 0.69 | 0.940032 |
Target: 5'- aGUCgaGCUCGAaugAAGGAgUGAGGCGCu -3' miRNA: 3'- -CAG--CGGGUUguaUUUCUgGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 109501 | 0.67 | 0.970494 |
Target: 5'- gGUCGCCgGACA---AGGCCGccuacaucaGGGaCGCc -3' miRNA: 3'- -CAGCGGgUUGUauuUCUGGC---------UCC-GCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 109392 | 0.66 | 0.982853 |
Target: 5'- -cCGCCCcGCGUAcggcucgucccacucGGGCCGGGG-GCa -3' miRNA: 3'- caGCGGGuUGUAUu--------------UCUGGCUCCgCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 109207 | 0.7 | 0.900891 |
Target: 5'- --aGUCCAGCAccagguUGAAGACgGgcAGGCGCg -3' miRNA: 3'- cagCGGGUUGU------AUUUCUGgC--UCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 108892 | 0.76 | 0.61376 |
Target: 5'- aGUCGCCCAGCGcGGccagguccagcAGGCCGugcaggucgggggacAGGCGCg -3' miRNA: 3'- -CAGCGGGUUGUaUU-----------UCUGGC---------------UCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 107656 | 0.67 | 0.978355 |
Target: 5'- -aUGCCUgccGGCcaAGAGGCCcuGGGGCGCg -3' miRNA: 3'- caGCGGG---UUGuaUUUCUGG--CUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 102075 | 0.67 | 0.967469 |
Target: 5'- -cCGCCCGccuGCAcGGAGGCUGgauAGGCGg -3' miRNA: 3'- caGCGGGU---UGUaUUUCUGGC---UCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 100314 | 0.66 | 0.982657 |
Target: 5'- aUCGCggCGGCGUGcGAGGCCGuccgcAGGUGCg -3' miRNA: 3'- cAGCGg-GUUGUAU-UUCUGGC-----UCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 100055 | 0.67 | 0.97593 |
Target: 5'- aGUC-CaCCAGCuccAAAGugacccCCGAGGCGCg -3' miRNA: 3'- -CAGcG-GGUUGua-UUUCu-----GGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 99426 | 0.7 | 0.913287 |
Target: 5'- --aGCCCAcCAccGGGAccaCCGAGGUGCg -3' miRNA: 3'- cagCGGGUuGUauUUCU---GGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 96461 | 0.66 | 0.984549 |
Target: 5'- gGUCGCcacCCAGgAUGAccagcGACCcgGGGGCGCc -3' miRNA: 3'- -CAGCG---GGUUgUAUUu----CUGG--CUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 94827 | 0.72 | 0.807945 |
Target: 5'- -cCGCCCGAagcgAGAGACCGccaGGGCGa -3' miRNA: 3'- caGCGGGUUgua-UUUCUGGC---UCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 94466 | 0.73 | 0.771125 |
Target: 5'- -aCGCCCucGACc---AGACCGAGGCGg -3' miRNA: 3'- caGCGGG--UUGuauuUCUGGCUCCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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