miRNA display CGI


Results 101 - 120 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 73377 0.73 0.771125
Target:  5'- --aGCCCcACA--AAGACCGAGGUGg -3'
miRNA:   3'- cagCGGGuUGUauUUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 69224 0.67 0.970494
Target:  5'- -gCGCgCgGGCGcUGGAGGCCGGGG-GCg -3'
miRNA:   3'- caGCG-GgUUGU-AUUUCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 69047 0.66 0.985606
Target:  5'- -gCGCgCGGCAcgucccguCCGAGGCGCc -3'
miRNA:   3'- caGCGgGUUGUauuucu--GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 68817 0.68 0.96423
Target:  5'- --gGCCCucGCucGAGGGgCGGGGCGCc -3'
miRNA:   3'- cagCGGGu-UGuaUUUCUgGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 66917 0.74 0.732285
Target:  5'- --gGCCgGggaGCAU-GGGGCCGGGGCGCg -3'
miRNA:   3'- cagCGGgU---UGUAuUUCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 60600 0.71 0.88053
Target:  5'- -cCGCCCGAa--AAAGuCUGGGGCGUa -3'
miRNA:   3'- caGCGGGUUguaUUUCuGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 59748 0.68 0.960772
Target:  5'- --gGCCCGugGcccccGGGGgCGAGGCGCc -3'
miRNA:   3'- cagCGGGUugUau---UUCUgGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 59023 0.68 0.960772
Target:  5'- --gGCCCGAUcccauugaauGUGGAGcACCuucagGAGGCGCa -3'
miRNA:   3'- cagCGGGUUG----------UAUUUC-UGG-----CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 58925 0.79 0.469935
Target:  5'- -cCGCCCAGau---AGACUGGGGCGCg -3'
miRNA:   3'- caGCGGGUUguauuUCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 58879 0.74 0.72233
Target:  5'- -gCGUCCAGCGUggcGAGGACCaGGGCGg -3'
miRNA:   3'- caGCGGGUUGUA---UUUCUGGcUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 58150 0.66 0.987858
Target:  5'- -cCGCCCAGC-UGAGGguGCCGcccccGGcCGCg -3'
miRNA:   3'- caGCGGGUUGuAUUUC--UGGCu----CC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 57945 0.69 0.940032
Target:  5'- cGUCGCCCAccccGCG---AGGCCG-GGCa- -3'
miRNA:   3'- -CAGCGGGU----UGUauuUCUGGCuCCGcg -5'
3599 5' -52.7 NC_001650.1 + 57482 0.72 0.842168
Target:  5'- --aGCCCGAgGgaggGGAGGCaugCGGGGCGCa -3'
miRNA:   3'- cagCGGGUUgUa---UUUCUG---GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 56606 0.7 0.900891
Target:  5'- -cUGCCUAGCGggGAAGAgCGAGG-GCg -3'
miRNA:   3'- caGCGGGUUGUa-UUUCUgGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 53535 0.67 0.967469
Target:  5'- -cUGCCCGGCcgGguGAGAUCGGGGgGa -3'
miRNA:   3'- caGCGGGUUGuaU--UUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 51525 0.68 0.96423
Target:  5'- --gGCCCAgccacuggccacGCAgAGGGACUGAGGCuGUg -3'
miRNA:   3'- cagCGGGU------------UGUaUUUCUGGCUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 51012 0.72 0.833885
Target:  5'- -gUGCCCGAgAaGAAGACCuGGGGCuGCu -3'
miRNA:   3'- caGCGGGUUgUaUUUCUGG-CUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 50980 0.72 0.825415
Target:  5'- -cUGCCCGugugcgagcuGCGgGGGGACgGGGGCGCg -3'
miRNA:   3'- caGCGGGU----------UGUaUUUCUGgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 46504 0.71 0.865822
Target:  5'- cUC-CCCGGCGUcgGGGCCGgcggcgaccGGGCGCc -3'
miRNA:   3'- cAGcGGGUUGUAuuUCUGGC---------UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 46341 0.69 0.944653
Target:  5'- -gCGCUCGGguUAAuccccgaGCCGGGGCGCg -3'
miRNA:   3'- caGCGGGUUguAUUuc-----UGGCUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.