Results 41 - 60 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 173937 | 0.75 | 0.681813 |
Target: 5'- aGUCuGCCCAGCAaccggggucuuUAuuGGCCGAgGGUGCa -3' miRNA: 3'- -CAG-CGGGUUGU-----------AUuuCUGGCU-CCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 7230 | 0.75 | 0.681813 |
Target: 5'- aGUCuGCCCAGCAaccggggucuuUAuuGGCCGAgGGUGCa -3' miRNA: 3'- -CAG-CGGGUUGU-----------AUuuCUGGCU-CCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 158281 | 0.75 | 0.670529 |
Target: 5'- -aUGCCCAgggGCAUGGcguugucGGGCCGGGGCaGCa -3' miRNA: 3'- caGCGGGU---UGUAUU-------UCUGGCUCCG-CG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 164401 | 0.79 | 0.469935 |
Target: 5'- cUCGCCCAGCcugAGAGACaggcgCGGGGCGUg -3' miRNA: 3'- cAGCGGGUUGua-UUUCUG-----GCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 58925 | 0.79 | 0.469935 |
Target: 5'- -cCGCCCAGau---AGACUGGGGCGCg -3' miRNA: 3'- caGCGGGUUguauuUCUGGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 85011 | 0.71 | 0.865822 |
Target: 5'- cGUCGgaCCCGACAUAc---CCGAGGUGUa -3' miRNA: 3'- -CAGC--GGGUUGUAUuucuGGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 129869 | 0.71 | 0.865822 |
Target: 5'- --aGCUCAACcgGcAGGCCGAGGcCGUg -3' miRNA: 3'- cagCGGGUUGuaUuUCUGGCUCC-GCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 129711 | 0.69 | 0.930064 |
Target: 5'- --aGCUCAcggACAaagUGGAGGCCGAGGUGg -3' miRNA: 3'- cagCGGGU---UGU---AUUUCUGGCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 76183 | 0.69 | 0.924716 |
Target: 5'- aUCuaCCAACAggUGGAGGCCGAG-UGCa -3' miRNA: 3'- cAGcgGGUUGU--AUUUCUGGCUCcGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 119914 | 0.69 | 0.924716 |
Target: 5'- cGUCGCCCAcGC-UGAAGGCgaacaCGAaGGUGCc -3' miRNA: 3'- -CAGCGGGU-UGuAUUUCUG-----GCU-CCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 133881 | 0.7 | 0.919123 |
Target: 5'- gGUCGCCUcuagaGGCcgccccuGGGACCGcGGCGCc -3' miRNA: 3'- -CAGCGGG-----UUGuau----UUCUGGCuCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 128208 | 0.7 | 0.913287 |
Target: 5'- aUCGCCCG----GGAGAgcaacuccuUCGAGGCGCu -3' miRNA: 3'- cAGCGGGUuguaUUUCU---------GGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 99426 | 0.7 | 0.913287 |
Target: 5'- --aGCCCAcCAccGGGAccaCCGAGGUGCg -3' miRNA: 3'- cagCGGGUuGUauUUCU---GGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 130846 | 0.7 | 0.907209 |
Target: 5'- -cCGCCCugcuGCucgaggccAAGACCGGGGgGCu -3' miRNA: 3'- caGCGGGu---UGuau-----UUCUGGCUCCgCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 131546 | 0.7 | 0.894337 |
Target: 5'- -cCGCCCGGgGgcuGGACgCGGGGCGg -3' miRNA: 3'- caGCGGGUUgUauuUCUG-GCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 154399 | 0.7 | 0.887548 |
Target: 5'- --aGCCCGGCucuaaGUGAcucuccAGGCgCGGGGCGCa -3' miRNA: 3'- cagCGGGUUG-----UAUU------UCUG-GCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 136080 | 0.7 | 0.887548 |
Target: 5'- -gCGgCCGcCAUGAAGGCgGGGGCGg -3' miRNA: 3'- caGCgGGUuGUAUUUCUGgCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 143047 | 0.71 | 0.88053 |
Target: 5'- aUCGCgggCCAcGCGgAGGGcGCCGAGGCGCu -3' miRNA: 3'- cAGCG---GGU-UGUaUUUC-UGGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 60600 | 0.71 | 0.88053 |
Target: 5'- -cCGCCCGAa--AAAGuCUGGGGCGUa -3' miRNA: 3'- caGCGGGUUguaUUUCuGGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 46504 | 0.71 | 0.865822 |
Target: 5'- cUC-CCCGGCGUcgGGGCCGgcggcgaccGGGCGCc -3' miRNA: 3'- cAGcGGGUUGUAuuUCUGGC---------UCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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