miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 46341 0.69 0.944653
Target:  5'- -gCGCUCGGguUAAuccccgaGCCGGGGCGCg -3'
miRNA:   3'- caGCGGGUUguAUUuc-----UGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 116774 0.69 0.944653
Target:  5'- cUCGCaCUgAGCAUGcucugGAGACCGGGGCu- -3'
miRNA:   3'- cAGCG-GG-UUGUAU-----UUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 29062 0.68 0.949034
Target:  5'- -gUGgCCGACGUGGGGgaguACCuGGGCGCg -3'
miRNA:   3'- caGCgGGUUGUAUUUC----UGGcUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 75851 0.68 0.949034
Target:  5'- cUCGCUUcucUAUAAAGuCUGGGGCGCu -3'
miRNA:   3'- cAGCGGGuu-GUAUUUCuGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 82555 0.68 0.953179
Target:  5'- -cUGCCCAacuACAUGuaccGGcccGCCGAGGaCGCg -3'
miRNA:   3'- caGCGGGU---UGUAUu---UC---UGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 79051 0.68 0.956709
Target:  5'- --aGCCCucuggagAGgAUAgcGGCCGAGGCGUc -3'
miRNA:   3'- cagCGGG-------UUgUAUuuCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 88508 0.69 0.930064
Target:  5'- -aCGCCgGGCGgGAGGaaGCgGGGGCGCc -3'
miRNA:   3'- caGCGGgUUGUaUUUC--UGgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 129711 0.69 0.930064
Target:  5'- --aGCUCAcggACAaagUGGAGGCCGAGGUGg -3'
miRNA:   3'- cagCGGGU---UGU---AUUUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 154399 0.7 0.887548
Target:  5'- --aGCCCGGCucuaaGUGAcucuccAGGCgCGGGGCGCa -3'
miRNA:   3'- cagCGGGUUG-----UAUU------UCUG-GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 131546 0.7 0.894337
Target:  5'- -cCGCCCGGgGgcuGGACgCGGGGCGg -3'
miRNA:   3'- caGCGGGUUgUauuUCUG-GCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 130846 0.7 0.907209
Target:  5'- -cCGCCCugcuGCucgaggccAAGACCGGGGgGCu -3'
miRNA:   3'- caGCGGGu---UGuau-----UUCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 99426 0.7 0.913287
Target:  5'- --aGCCCAcCAccGGGAccaCCGAGGUGCg -3'
miRNA:   3'- cagCGGGUuGUauUUCU---GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 128208 0.7 0.913287
Target:  5'- aUCGCCCG----GGAGAgcaacuccuUCGAGGCGCu -3'
miRNA:   3'- cAGCGGGUuguaUUUCU---------GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 133881 0.7 0.919123
Target:  5'- gGUCGCCUcuagaGGCcgccccuGGGACCGcGGCGCc -3'
miRNA:   3'- -CAGCGGG-----UUGuau----UUCUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 119914 0.69 0.924716
Target:  5'- cGUCGCCCAcGC-UGAAGGCgaacaCGAaGGUGCc -3'
miRNA:   3'- -CAGCGGGU-UGuAUUUCUG-----GCU-CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 76183 0.69 0.924716
Target:  5'- aUCuaCCAACAggUGGAGGCCGAG-UGCa -3'
miRNA:   3'- cAGcgGGUUGU--AUUUCUGGCUCcGCG- -5'
3599 5' -52.7 NC_001650.1 + 135600 0.66 0.989293
Target:  5'- -cCGCCaguAUAUAAGGGCgGuGGGUGCc -3'
miRNA:   3'- caGCGGgu-UGUAUUUCUGgC-UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 37087 0.8 0.397688
Target:  5'- aGUCGCCCGGCccGAGGugCG-GGUGCa -3'
miRNA:   3'- -CAGCGGGUUGuaUUUCugGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 121245 0.77 0.5574
Target:  5'- cGUCGUCCAcCAUGGAGAagauuucCCG-GGCGCg -3'
miRNA:   3'- -CAGCGGGUuGUAUUUCU-------GGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 76866 0.77 0.578792
Target:  5'- aGUgGCCCAuguACAUccuGGGGGCCGAgaaGGCGCg -3'
miRNA:   3'- -CAgCGGGU---UGUA---UUUCUGGCU---CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.