miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 172963 0.72 0.833885
Target:  5'- --gGCCCAAU--GGGGACCGAGGgGg -3'
miRNA:   3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 6256 0.72 0.833885
Target:  5'- --gGCCCAAU--GGGGACCGAGGgGg -3'
miRNA:   3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 51012 0.72 0.833885
Target:  5'- -gUGCCCGAgAaGAAGACCuGGGGCuGCu -3'
miRNA:   3'- caGCGGGUUgUaUUUCUGG-CUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 57482 0.72 0.842168
Target:  5'- --aGCCCGAgGgaggGGAGGCaugCGGGGCGCa -3'
miRNA:   3'- cagCGGGUUgUa---UUUCUG---GCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 114735 0.71 0.858144
Target:  5'- gGUC-CCCAgauACAuuUAAGGAaaucCCGGGGCGCu -3'
miRNA:   3'- -CAGcGGGU---UGU--AUUUCU----GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 173605 0.71 0.88053
Target:  5'- uUgGCCCAAU--GGGGGCCGAGGgGg -3'
miRNA:   3'- cAgCGGGUUGuaUUUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 6898 0.71 0.88053
Target:  5'- uUgGCCCAAU--GGGGGCCGAGGgGg -3'
miRNA:   3'- cAgCGGGUUGuaUUUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 177930 0.73 0.780543
Target:  5'- -cCGCCU---GUAAGGACCGAGGCu- -3'
miRNA:   3'- caGCGGGuugUAUUUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 127424 0.73 0.774908
Target:  5'- uGUCGgUCAGCAUGuccuccgccgcccggGAGACCGGGGC-Cg -3'
miRNA:   3'- -CAGCgGGUUGUAU---------------UUCUGGCUCCGcG- -5'
3599 5' -52.7 NC_001650.1 + 73377 0.73 0.771125
Target:  5'- --aGCCCcACA--AAGACCGAGGUGg -3'
miRNA:   3'- cagCGGGuUGUauUUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 37087 0.8 0.397688
Target:  5'- aGUCGCCCGGCccGAGGugCG-GGUGCa -3'
miRNA:   3'- -CAGCGGGUUGuaUUUCugGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 121245 0.77 0.5574
Target:  5'- cGUCGUCCAcCAUGGAGAagauuucCCG-GGCGCg -3'
miRNA:   3'- -CAGCGGGUuGUAUUUCU-------GGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 76866 0.77 0.578792
Target:  5'- aGUgGCCCAuguACAUccuGGGGGCCGAgaaGGCGCg -3'
miRNA:   3'- -CAgCGGGU---UGUA---UUUCUGGCU---CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 27811 0.77 0.589042
Target:  5'- -cUGCCCGA---GAGGGCCGAGGCGg -3'
miRNA:   3'- caGCGGGUUguaUUUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 108892 0.76 0.61376
Target:  5'- aGUCGCCCAGCGcGGccagguccagcAGGCCGugcaggucgggggacAGGCGCg -3'
miRNA:   3'- -CAGCGGGUUGUaUU-----------UCUGGC---------------UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 58879 0.74 0.72233
Target:  5'- -gCGUCCAGCGUggcGAGGACCaGGGCGg -3'
miRNA:   3'- caGCGGGUUGUA---UUUCUGGcUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 111092 0.74 0.741169
Target:  5'- aGUCGCCgCGGCGgcggcgaUAGGGGCCcguagcugaaaaGGGGCGCa -3'
miRNA:   3'- -CAGCGG-GUUGU-------AUUUCUGG------------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 125935 0.74 0.75192
Target:  5'- --gGCCCggUuuuucuGGCCGAGGCGCc -3'
miRNA:   3'- cagCGGGuuGuauuu-CUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 79902 0.73 0.761581
Target:  5'- cUCGCCCGagacGCAggcccuGACCcAGGCGCa -3'
miRNA:   3'- cAGCGGGU----UGUauuu--CUGGcUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 143114 0.73 0.771125
Target:  5'- aUCGCCCGagcgcgccggcuGCAc--GGGCCGGGGCGg -3'
miRNA:   3'- cAGCGGGU------------UGUauuUCUGGCUCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.