Results 21 - 40 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3599 | 5' | -52.7 | NC_001650.1 | + | 114735 | 0.71 | 0.858144 |
Target: 5'- gGUC-CCCAgauACAuuUAAGGAaaucCCGGGGCGCu -3' miRNA: 3'- -CAGcGGGU---UGU--AUUUCU----GGCUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 6256 | 0.72 | 0.833885 |
Target: 5'- --gGCCCAAU--GGGGACCGAGGgGg -3' miRNA: 3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 143114 | 0.73 | 0.771125 |
Target: 5'- aUCGCCCGagcgcgccggcuGCAc--GGGCCGGGGCGg -3' miRNA: 3'- cAGCGGGU------------UGUauuUCUGGCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 76866 | 0.77 | 0.578792 |
Target: 5'- aGUgGCCCAuguACAUccuGGGGGCCGAgaaGGCGCg -3' miRNA: 3'- -CAgCGGGU---UGUA---UUUCUGGCU---CCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 178156 | 0.7 | 0.919123 |
Target: 5'- cGUCGCCgCAGCGgca--GCCG-GGCGUg -3' miRNA: 3'- -CAGCGG-GUUGUauuucUGGCuCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 6364 | 0.7 | 0.894337 |
Target: 5'- -cUGCCCAcucaaccccaugGCcaAUGAAGACCGGGGuUGCu -3' miRNA: 3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 30552 | 0.72 | 0.816765 |
Target: 5'- aUCGUUCAACAgagaaagAGAGACCGucuucucGGCGCc -3' miRNA: 3'- cAGCGGGUUGUa------UUUCUGGCu------CCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 121245 | 0.77 | 0.5574 |
Target: 5'- cGUCGUCCAcCAUGGAGAagauuucCCG-GGCGCg -3' miRNA: 3'- -CAGCGGGUuGUAUUUCU-------GGCuCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 173071 | 0.7 | 0.894337 |
Target: 5'- -cUGCCCAcucaaccccaugGCcaAUGAAGACCGGGGuUGCu -3' miRNA: 3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 37087 | 0.8 | 0.397688 |
Target: 5'- aGUCGCCCGGCccGAGGugCG-GGUGCa -3' miRNA: 3'- -CAGCGGGUUGuaUUUCugGCuCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 172963 | 0.72 | 0.833885 |
Target: 5'- --gGCCCAAU--GGGGACCGAGGgGg -3' miRNA: 3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 173605 | 0.71 | 0.88053 |
Target: 5'- uUgGCCCAAU--GGGGGCCGAGGgGg -3' miRNA: 3'- cAgCGGGUUGuaUUUCUGGCUCCgCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 11223 | 0.73 | 0.780543 |
Target: 5'- -cCGCCU---GUAAGGACCGAGGCu- -3' miRNA: 3'- caGCGGGuugUAUUUCUGGCUCCGcg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 73377 | 0.73 | 0.771125 |
Target: 5'- --aGCCCcACA--AAGACCGAGGUGg -3' miRNA: 3'- cagCGGGuUGUauUUCUGGCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 111092 | 0.74 | 0.741169 |
Target: 5'- aGUCGCCgCGGCGgcggcgaUAGGGGCCcguagcugaaaaGGGGCGCa -3' miRNA: 3'- -CAGCGG-GUUGU-------AUUUCUGG------------CUCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 27811 | 0.77 | 0.589042 |
Target: 5'- -cUGCCCGA---GAGGGCCGAGGCGg -3' miRNA: 3'- caGCGGGUUguaUUUCUGGCUCCGCg -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 24093 | 0.69 | 0.926884 |
Target: 5'- cUUGCCCGgggaggcgggcagaaACAggauGACCGAGcGCGCc -3' miRNA: 3'- cAGCGGGU---------------UGUauuuCUGGCUC-CGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 11449 | 0.7 | 0.919123 |
Target: 5'- cGUCGCCgCAGCGgca--GCCG-GGCGUg -3' miRNA: 3'- -CAGCGG-GUUGUauuucUGGCuCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 93444 | 0.7 | 0.907209 |
Target: 5'- uGUCGCgCGcgggcGCGUuucGGCCGuGGCGCg -3' miRNA: 3'- -CAGCGgGU-----UGUAuuuCUGGCuCCGCG- -5' |
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3599 | 5' | -52.7 | NC_001650.1 | + | 109207 | 0.7 | 0.900891 |
Target: 5'- --aGUCCAGCAccagguUGAAGACgGgcAGGCGCg -3' miRNA: 3'- cagCGGGUUGU------AUUUCUGgC--UCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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