miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 16174 0.7 0.919123
Target:  5'- gGUUGCCCAAgGacucucaccUAGAGGCCagguguagcuauGGGGCGUg -3'
miRNA:   3'- -CAGCGGGUUgU---------AUUUCUGG------------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 30552 0.72 0.816765
Target:  5'- aUCGUUCAACAgagaaagAGAGACCGucuucucGGCGCc -3'
miRNA:   3'- cAGCGGGUUGUa------UUUCUGGCu------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 121245 0.77 0.5574
Target:  5'- cGUCGUCCAcCAUGGAGAagauuucCCG-GGCGCg -3'
miRNA:   3'- -CAGCGGGUuGUAUUUCU-------GGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 182881 0.7 0.919123
Target:  5'- gGUUGCCCAAgGacucucaccUAGAGGCCagguguagcuauGGGGCGUg -3'
miRNA:   3'- -CAGCGGGUUgU---------AUUUCUGG------------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 37087 0.8 0.397688
Target:  5'- aGUCGCCCGGCccGAGGugCG-GGUGCa -3'
miRNA:   3'- -CAGCGGGUUGuaUUUCugGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 2768 0.67 0.97593
Target:  5'- gGUUGCCgGGCAgauuUAGGGAgUgGGGGUGCa -3'
miRNA:   3'- -CAGCGGgUUGU----AUUUCU-GgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 27811 0.77 0.589042
Target:  5'- -cUGCCCGA---GAGGGCCGAGGCGg -3'
miRNA:   3'- caGCGGGUUguaUUUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 31728 0.67 0.967469
Target:  5'- -cCGCCCAuccc--AGACCGAcaaacuGGCGCc -3'
miRNA:   3'- caGCGGGUuguauuUCUGGCU------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 102075 0.67 0.967469
Target:  5'- -cCGCCCGccuGCAcGGAGGCUGgauAGGCGg -3'
miRNA:   3'- caGCGGGU---UGUaUUUCUGGC---UCCGCg -5'
3599 5' -52.7 NC_001650.1 + 57945 0.69 0.940032
Target:  5'- cGUCGCCCAccccGCG---AGGCCG-GGCa- -3'
miRNA:   3'- -CAGCGGGU----UGUauuUCUGGCuCCGcg -5'
3599 5' -52.7 NC_001650.1 + 17714 0.69 0.93467
Target:  5'- -gCGCCCGucgACAUuuGGGCCugagaaaauggagGGGGCGUg -3'
miRNA:   3'- caGCGGGU---UGUAuuUCUGG-------------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 24093 0.69 0.926884
Target:  5'- cUUGCCCGgggaggcgggcagaaACAggauGACCGAGcGCGCc -3'
miRNA:   3'- cAGCGGGU---------------UGUauuuCUGGCUC-CGCG- -5'
3599 5' -52.7 NC_001650.1 + 11449 0.7 0.919123
Target:  5'- cGUCGCCgCAGCGgca--GCCG-GGCGUg -3'
miRNA:   3'- -CAGCGG-GUUGUauuucUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 56606 0.7 0.900891
Target:  5'- -cUGCCUAGCGggGAAGAgCGAGG-GCg -3'
miRNA:   3'- caGCGGGUUGUa-UUUCUgGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 173071 0.7 0.894337
Target:  5'- -cUGCCCAcucaaccccaugGCcaAUGAAGACCGGGGuUGCu -3'
miRNA:   3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 114735 0.71 0.858144
Target:  5'- gGUC-CCCAgauACAuuUAAGGAaaucCCGGGGCGCu -3'
miRNA:   3'- -CAGcGGGU---UGU--AUUUCU----GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 6256 0.72 0.833885
Target:  5'- --gGCCCAAU--GGGGACCGAGGgGg -3'
miRNA:   3'- cagCGGGUUGuaUUUCUGGCUCCgCg -5'
3599 5' -52.7 NC_001650.1 + 11223 0.73 0.780543
Target:  5'- -cCGCCU---GUAAGGACCGAGGCu- -3'
miRNA:   3'- caGCGGGuugUAUUUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 73377 0.73 0.771125
Target:  5'- --aGCCCcACA--AAGACCGAGGUGg -3'
miRNA:   3'- cagCGGGuUGUauUUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 111092 0.74 0.741169
Target:  5'- aGUCGCCgCGGCGgcggcgaUAGGGGCCcguagcugaaaaGGGGCGCa -3'
miRNA:   3'- -CAGCGG-GUUGU-------AUUUCUGG------------CUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.