miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 146153 0.66 0.987858
Target:  5'- cUCGCCCGGgcc--GGGCUGGGGCa- -3'
miRNA:   3'- cAGCGGGUUguauuUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 141465 0.67 0.978355
Target:  5'- cUCGCCgCcGCG---GGGCCGAGG-GCg -3'
miRNA:   3'- cAGCGG-GuUGUauuUCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 143114 0.73 0.771125
Target:  5'- aUCGCCCGagcgcgccggcuGCAc--GGGCCGGGGCGg -3'
miRNA:   3'- cAGCGGGU------------UGUauuUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 177930 0.73 0.780543
Target:  5'- -cCGCCU---GUAAGGACCGAGGCu- -3'
miRNA:   3'- caGCGGGuugUAUUUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 30552 0.72 0.816765
Target:  5'- aUCGUUCAACAgagaaagAGAGACCGucuucucGGCGCc -3'
miRNA:   3'- cAGCGGGUUGUa------UUUCUGGCu------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 51012 0.72 0.833885
Target:  5'- -gUGCCCGAgAaGAAGACCuGGGGCuGCu -3'
miRNA:   3'- caGCGGGUUgUaUUUCUGG-CUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 89552 0.7 0.894337
Target:  5'- -gCGCCCAACAUGGAGcacgcgGCCcGGGC-Ca -3'
miRNA:   3'- caGCGGGUUGUAUUUC------UGGcUCCGcG- -5'
3599 5' -52.7 NC_001650.1 + 109207 0.7 0.900891
Target:  5'- --aGUCCAGCAccagguUGAAGACgGgcAGGCGCg -3'
miRNA:   3'- cagCGGGUUGU------AUUUCUGgC--UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 182881 0.7 0.919123
Target:  5'- gGUUGCCCAAgGacucucaccUAGAGGCCagguguagcuauGGGGCGUg -3'
miRNA:   3'- -CAGCGGGUUgU---------AUUUCUGG------------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 69047 0.66 0.985606
Target:  5'- -gCGCgCGGCAcgucccguCCGAGGCGCc -3'
miRNA:   3'- caGCGgGUUGUauuucu--GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 178156 0.7 0.919123
Target:  5'- cGUCGCCgCAGCGgca--GCCG-GGCGUg -3'
miRNA:   3'- -CAGCGG-GUUGUauuucUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 110333 0.69 0.940032
Target:  5'- aGUCgaGCUCGAaugAAGGAgUGAGGCGCu -3'
miRNA:   3'- -CAG--CGGGUUguaUUUCUgGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 142974 0.68 0.959691
Target:  5'- -cCGCCCuggggaAACGcccUGGAGACCGccuccgcaaacuccGGGCGCc -3'
miRNA:   3'- caGCGGG------UUGU---AUUUCUGGC--------------UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 31728 0.67 0.967469
Target:  5'- -cCGCCCAuccc--AGACCGAcaaacuGGCGCc -3'
miRNA:   3'- caGCGGGUuguauuUCUGGCU------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 2768 0.67 0.97593
Target:  5'- gGUUGCCgGGCAgauuUAGGGAgUgGGGGUGCa -3'
miRNA:   3'- -CAGCGGgUUGU----AUUUCU-GgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 74063 0.66 0.979942
Target:  5'- -cCGCCCAGCcugGUGAuguacucguucaccAGGCCGuacAGGcCGCg -3'
miRNA:   3'- caGCGGGUUG---UAUU--------------UCUGGC---UCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 109392 0.66 0.982853
Target:  5'- -cCGCCCcGCGUAcggcucgucccacucGGGCCGGGG-GCa -3'
miRNA:   3'- caGCGGGuUGUAUu--------------UCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 96461 0.66 0.984549
Target:  5'- gGUCGCcacCCAGgAUGAccagcGACCcgGGGGCGCc -3'
miRNA:   3'- -CAGCG---GGUUgUAUUu----CUGG--CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 291 0.67 0.978355
Target:  5'- -gCGCCCcc--UGccGGCCGAGGCGa -3'
miRNA:   3'- caGCGGGuuguAUuuCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 30408 0.67 0.978355
Target:  5'- uGUCuGCCC-GCAgAGGGcGCCcugGAGGCGCu -3'
miRNA:   3'- -CAG-CGGGuUGUaUUUC-UGG---CUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.