miRNA display CGI


Results 81 - 100 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 164648 0.67 0.969906
Target:  5'- -cCGCgCGGCAcccgggcucccgGGGGACCGcGGCGCu -3'
miRNA:   3'- caGCGgGUUGUa-----------UUUCUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 69224 0.67 0.970494
Target:  5'- -gCGCgCgGGCGcUGGAGGCCGGGG-GCg -3'
miRNA:   3'- caGCG-GgUUGU-AUUUCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 22493 0.67 0.970201
Target:  5'- -cCGCCCGGCAU--GGGCCccgccucGAGGCc- -3'
miRNA:   3'- caGCGGGUUGUAuuUCUGG-------CUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 66917 0.74 0.732285
Target:  5'- --gGCCgGggaGCAU-GGGGCCGGGGCGCg -3'
miRNA:   3'- cagCGGgU---UGUAuUUCUGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 85011 0.71 0.865822
Target:  5'- cGUCGgaCCCGACAUAc---CCGAGGUGUa -3'
miRNA:   3'- -CAGC--GGGUUGUAUuucuGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 155589 0.67 0.970494
Target:  5'- -cUGCaCCAGCccccUGGAGGCCGcguaguuGGCGCg -3'
miRNA:   3'- caGCG-GGUUGu---AUUUCUGGCu------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 78638 0.69 0.93517
Target:  5'- --aGCCC-ACGUGGugcuGcCCGAGGCGUu -3'
miRNA:   3'- cagCGGGuUGUAUUu---CuGGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 88508 0.69 0.930064
Target:  5'- -aCGCCgGGCGgGAGGaaGCgGGGGCGCc -3'
miRNA:   3'- caGCGGgUUGUaUUUC--UGgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 129711 0.69 0.930064
Target:  5'- --aGCUCAcggACAaagUGGAGGCCGAGGUGg -3'
miRNA:   3'- cagCGGGU---UGU---AUUUCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 119914 0.69 0.924716
Target:  5'- cGUCGCCCAcGC-UGAAGGCgaacaCGAaGGUGCc -3'
miRNA:   3'- -CAGCGGGU-UGuAUUUCUG-----GCU-CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 133881 0.7 0.919123
Target:  5'- gGUCGCCUcuagaGGCcgccccuGGGACCGcGGCGCc -3'
miRNA:   3'- -CAGCGGG-----UUGuau----UUCUGGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 155261 0.72 0.825415
Target:  5'- -aCGCCCAGCAgggGAGGAuguuacCCGccAGGUGCc -3'
miRNA:   3'- caGCGGGUUGUa--UUUCU------GGC--UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 291 0.67 0.978355
Target:  5'- -gCGCCCcc--UGccGGCCGAGGCGa -3'
miRNA:   3'- caGCGGGuuguAUuuCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 30408 0.67 0.978355
Target:  5'- uGUCuGCCC-GCAgAGGGcGCCcugGAGGCGCu -3'
miRNA:   3'- -CAG-CGGGuUGUaUUUC-UGG---CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 78678 0.67 0.97593
Target:  5'- --gGCCUGGCG-GAGGACgCG-GGCGCa -3'
miRNA:   3'- cagCGGGUUGUaUUUCUG-GCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 76183 0.69 0.924716
Target:  5'- aUCuaCCAACAggUGGAGGCCGAG-UGCa -3'
miRNA:   3'- cAGcgGGUUGU--AUUUCUGGCUCcGCG- -5'
3599 5' -52.7 NC_001650.1 + 36472 0.67 0.97593
Target:  5'- aUCcCCCAccuguucagGCA--GGGACCGGGGgGCa -3'
miRNA:   3'- cAGcGGGU---------UGUauUUCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 100055 0.67 0.97593
Target:  5'- aGUC-CaCCAGCuccAAAGugacccCCGAGGCGCg -3'
miRNA:   3'- -CAGcG-GGUUGua-UUUCu-----GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 118187 0.67 0.973312
Target:  5'- --aGCCUAAagaacAGGCCGGGGaCGCa -3'
miRNA:   3'- cagCGGGUUguauuUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 75314 0.67 0.970494
Target:  5'- -gCGCCCcccuGCGgccgcGGA-CGAGGCGCg -3'
miRNA:   3'- caGCGGGu---UGUauu--UCUgGCUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.