miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 96461 0.66 0.984549
Target:  5'- gGUCGCcacCCAGgAUGAccagcGACCcgGGGGCGCc -3'
miRNA:   3'- -CAGCG---GGUUgUAUUu----CUGG--CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 39534 0.66 0.984549
Target:  5'- -cCGCCagaUAGCAUGcagaaGAGACCGAaacuucGGUGCu -3'
miRNA:   3'- caGCGG---GUUGUAU-----UUCUGGCU------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 109392 0.66 0.982853
Target:  5'- -cCGCCCcGCGUAcggcucgucccacucGGGCCGGGG-GCa -3'
miRNA:   3'- caGCGGGuUGUAUu--------------UCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 131469 0.66 0.982657
Target:  5'- -cCGCgCCAGCA---GGAUCGGGuccGCGCg -3'
miRNA:   3'- caGCG-GGUUGUauuUCUGGCUC---CGCG- -5'
3599 5' -52.7 NC_001650.1 + 100314 0.66 0.982657
Target:  5'- aUCGCggCGGCGUGcGAGGCCGuccgcAGGUGCg -3'
miRNA:   3'- cAGCGg-GUUGUAU-UUCUGGC-----UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 111153 0.66 0.982657
Target:  5'- --gGCCCucuCAgggAGGGugUGAGGCGg -3'
miRNA:   3'- cagCGGGuu-GUa--UUUCugGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 79602 0.66 0.982657
Target:  5'- -cCGCCCGGgGgcgcGA-CGGGGCGCg -3'
miRNA:   3'- caGCGGGUUgUauuuCUgGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 80243 0.66 0.982458
Target:  5'- -cCGCCUucuACGUGAacGGGCUgcugcugGAGGCGUg -3'
miRNA:   3'- caGCGGGu--UGUAUU--UCUGG-------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 74063 0.66 0.979942
Target:  5'- -cCGCCCAGCcugGUGAuguacucguucaccAGGCCGuacAGGcCGCg -3'
miRNA:   3'- caGCGGGUUG---UAUU--------------UCUGGC---UCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 107656 0.67 0.978355
Target:  5'- -aUGCCUgccGGCcaAGAGGCCcuGGGGCGCg -3'
miRNA:   3'- caGCGGG---UUGuaUUUCUGG--CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 141465 0.67 0.978355
Target:  5'- cUCGCCgCcGCG---GGGCCGAGG-GCg -3'
miRNA:   3'- cAGCGG-GuUGUauuUCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 36085 0.67 0.978355
Target:  5'- -cCGCCCcGCGUGAaacuccAGGucccCCGcGGCGCa -3'
miRNA:   3'- caGCGGGuUGUAUU------UCU----GGCuCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 291 0.67 0.978355
Target:  5'- -gCGCCCcc--UGccGGCCGAGGCGa -3'
miRNA:   3'- caGCGGGuuguAUuuCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 30408 0.67 0.978355
Target:  5'- uGUCuGCCC-GCAgAGGGcGCCcugGAGGCGCu -3'
miRNA:   3'- -CAG-CGGGuUGUaUUUC-UGG---CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 166998 0.67 0.978355
Target:  5'- -gCGCCCcc--UGccGGCCGAGGCGa -3'
miRNA:   3'- caGCGGGuuguAUuuCUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 2768 0.67 0.97593
Target:  5'- gGUUGCCgGGCAgauuUAGGGAgUgGGGGUGCa -3'
miRNA:   3'- -CAGCGGgUUGU----AUUUCU-GgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 36472 0.67 0.97593
Target:  5'- aUCcCCCAccuguucagGCA--GGGACCGGGGgGCa -3'
miRNA:   3'- cAGcGGGU---------UGUauUUCUGGCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 2624 0.67 0.97593
Target:  5'- gGUUGCCgGGCAgauuUAGGGAgUgGGGGUGCa -3'
miRNA:   3'- -CAGCGGgUUGU----AUUUCU-GgCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 142698 0.67 0.97593
Target:  5'- -aCGUCCAGCAgcucGGAGGCCGccacGGGCc- -3'
miRNA:   3'- caGCGGGUUGUa---UUUCUGGC----UCCGcg -5'
3599 5' -52.7 NC_001650.1 + 100055 0.67 0.97593
Target:  5'- aGUC-CaCCAGCuccAAAGugacccCCGAGGCGCg -3'
miRNA:   3'- -CAGcG-GGUUGua-UUUCu-----GGCUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.