miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3600 3' -54.4 NC_001650.1 + 131689 0.68 0.920049
Target:  5'- gUGGAGGUgCUcagGAccguGGCCCCCUCCc- -3'
miRNA:   3'- gGCUUCCA-GAa--CUu---CUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 134136 0.68 0.920049
Target:  5'- gCCG-GGGUCUgGggGGCgCCC-CCAGc -3'
miRNA:   3'- -GGCuUCCAGAaCuuCUGgGGGaGGUU- -5'
3600 3' -54.4 NC_001650.1 + 35216 0.68 0.914308
Target:  5'- gUGggGGaCaaGGAGACCCCCaUCCu- -3'
miRNA:   3'- gGCuuCCaGaaCUUCUGGGGG-AGGuu -5'
3600 3' -54.4 NC_001650.1 + 52836 0.68 0.914308
Target:  5'- gCGcGAGGUgccGAGGACCCCCgggCCAGu -3'
miRNA:   3'- gGC-UUCCAgaaCUUCUGGGGGa--GGUU- -5'
3600 3' -54.4 NC_001650.1 + 99443 0.68 0.914308
Target:  5'- aCCG-AGGUgCgaGggGACCCCUUaCCGg -3'
miRNA:   3'- -GGCuUCCA-GaaCuuCUGGGGGA-GGUu -5'
3600 3' -54.4 NC_001650.1 + 26734 0.68 0.908329
Target:  5'- gUGGAGGUUgcccagGAGGgacGCCUCCUCCAc -3'
miRNA:   3'- gGCUUCCAGaa----CUUC---UGGGGGAGGUu -5'
3600 3' -54.4 NC_001650.1 + 112684 0.68 0.902114
Target:  5'- gCGAGGGUUUaUGAauagAGACCaCCCUCUc- -3'
miRNA:   3'- gGCUUCCAGA-ACU----UCUGG-GGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 28742 0.68 0.895666
Target:  5'- uCCGAccuGGGUCUUGcAGGAcacaaacucCCCCCgggcggCCGAg -3'
miRNA:   3'- -GGCU---UCCAGAAC-UUCU---------GGGGGa-----GGUU- -5'
3600 3' -54.4 NC_001650.1 + 93001 0.68 0.895666
Target:  5'- cCCuGAGGaCgcgGAGGGCCCCUUCCu- -3'
miRNA:   3'- -GGcUUCCaGaa-CUUCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 130844 0.69 0.874957
Target:  5'- uCC-AGGGUCUcuauggccucggUGAGGACCCCCacgucgUCCGu -3'
miRNA:   3'- -GGcUUCCAGA------------ACUUCUGGGGG------AGGUu -5'
3600 3' -54.4 NC_001650.1 + 42030 0.69 0.860057
Target:  5'- uUGAAGGaag-GggGACCCCCgacUCCAAc -3'
miRNA:   3'- gGCUUCCagaaCuuCUGGGGG---AGGUU- -5'
3600 3' -54.4 NC_001650.1 + 141857 0.7 0.852296
Target:  5'- cCUGggGGUgUUuugcuucgcgcGggGGCCCCCgaggCCGAa -3'
miRNA:   3'- -GGCuuCCAgAA-----------CuuCUGGGGGa---GGUU- -5'
3600 3' -54.4 NC_001650.1 + 4681 0.7 0.852296
Target:  5'- uCCgGggGGUCUUaAAGACCCUCUaggaCCAc -3'
miRNA:   3'- -GG-CuuCCAGAAcUUCUGGGGGA----GGUu -5'
3600 3' -54.4 NC_001650.1 + 171388 0.7 0.852296
Target:  5'- uCCgGggGGUCUUaAAGACCCUCUaggaCCAc -3'
miRNA:   3'- -GG-CuuCCAGAAcUUCUGGGGGA----GGUu -5'
3600 3' -54.4 NC_001650.1 + 117168 0.7 0.844334
Target:  5'- aCGucaGAGGg---GGAGACCCUCUCCAGa -3'
miRNA:   3'- gGC---UUCCagaaCUUCUGGGGGAGGUU- -5'
3600 3' -54.4 NC_001650.1 + 124374 0.7 0.841095
Target:  5'- gCCGggGGUCgcgcccaugagcGAGGACCgCCCggccUCCGAa -3'
miRNA:   3'- -GGCuuCCAGaa----------CUUCUGG-GGG----AGGUU- -5'
3600 3' -54.4 NC_001650.1 + 57901 0.7 0.827839
Target:  5'- aCGAGGaGUUc-GAGGGCCCCCUCUu- -3'
miRNA:   3'- gGCUUC-CAGaaCUUCUGGGGGAGGuu -5'
3600 3' -54.4 NC_001650.1 + 5847 0.7 0.810632
Target:  5'- cCCGggGGUCUaaGggGGCCgCCCacUCUAc -3'
miRNA:   3'- -GGCuuCCAGAa-CuuCUGG-GGG--AGGUu -5'
3600 3' -54.4 NC_001650.1 + 172554 0.7 0.810632
Target:  5'- cCCGggGGUCUaaGggGGCCgCCCacUCUAc -3'
miRNA:   3'- -GGCuuCCAGAa-CuuCUGG-GGG--AGGUu -5'
3600 3' -54.4 NC_001650.1 + 93952 0.71 0.792778
Target:  5'- cUCGAGGGUCUUGAgcaGGugCCCgaaCUCUGGg -3'
miRNA:   3'- -GGCUUCCAGAACU---UCugGGG---GAGGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.