miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3600 5' -56.2 NC_001650.1 + 142598 0.66 0.929714
Target:  5'- ---aUCUGGGGGUccaugcacgCGCCcGCCGUCa -3'
miRNA:   3'- ccaaGGACCCCCAcaa------GUGG-UGGCAG- -5'
3600 5' -56.2 NC_001650.1 + 8573 0.67 0.906925
Target:  5'- aGGggUCCUgagugugGGGGGUGgcauUCACCcCCGg- -3'
miRNA:   3'- -CCa-AGGA-------CCCCCACa---AGUGGuGGCag -5'
3600 5' -56.2 NC_001650.1 + 175280 0.67 0.906925
Target:  5'- aGGggUCCUgagugugGGGGGUGgcauUCACCcCCGg- -3'
miRNA:   3'- -CCa-AGGA-------CCCCCACa---AGUGGuGGCag -5'
3600 5' -56.2 NC_001650.1 + 106958 0.67 0.901411
Target:  5'- ---cCCUGGGGGgcgcggUCACCACgGa- -3'
miRNA:   3'- ccaaGGACCCCCaca---AGUGGUGgCag -5'
3600 5' -56.2 NC_001650.1 + 101750 0.67 0.895072
Target:  5'- aGGUUCCaGGGGGUGggggUCcagaucagggACC-CCGa- -3'
miRNA:   3'- -CCAAGGaCCCCCACa---AG----------UGGuGGCag -5'
3600 5' -56.2 NC_001650.1 + 156956 0.67 0.888512
Target:  5'- cGGUgUCCUGGGcGGUcaGUauggCAUCACCGa- -3'
miRNA:   3'- -CCA-AGGACCC-CCA--CAa---GUGGUGGCag -5'
3600 5' -56.2 NC_001650.1 + 121102 0.68 0.874746
Target:  5'- cGGUgCUUGGGGGcGUugUCGCgCGCCGcCc -3'
miRNA:   3'- -CCAaGGACCCCCaCA--AGUG-GUGGCaG- -5'
3600 5' -56.2 NC_001650.1 + 102401 0.68 0.867547
Target:  5'- aGUgcgCCUGGGGGUGUcucuggggccccUCGuCCucguucCCGUCc -3'
miRNA:   3'- cCAa--GGACCCCCACA------------AGU-GGu-----GGCAG- -5'
3600 5' -56.2 NC_001650.1 + 59440 0.7 0.776356
Target:  5'- ----gCUGGGGGUGa-CGCaCGCCGUCu -3'
miRNA:   3'- ccaagGACCCCCACaaGUG-GUGGCAG- -5'
3600 5' -56.2 NC_001650.1 + 49155 0.73 0.620232
Target:  5'- gGGgUCCUgcacGGGcaccucagaGGUGUUgACCACCGUCa -3'
miRNA:   3'- -CCaAGGA----CCC---------CCACAAgUGGUGGCAG- -5'
3600 5' -56.2 NC_001650.1 + 32950 0.74 0.570358
Target:  5'- aGGUUUCUGGGGGUGgcguaCACCuCUGg- -3'
miRNA:   3'- -CCAAGGACCCCCACaa---GUGGuGGCag -5'
3600 5' -56.2 NC_001650.1 + 141862 0.75 0.502429
Target:  5'- cGGggCCUGGGGGUGUUUugCuuCG-Cg -3'
miRNA:   3'- -CCaaGGACCCCCACAAGugGugGCaG- -5'
3600 5' -56.2 NC_001650.1 + 123710 0.78 0.355383
Target:  5'- gGGcUgCUGGGGGUGgaCGCCcCCGUCa -3'
miRNA:   3'- -CCaAgGACCCCCACaaGUGGuGGCAG- -5'
3600 5' -56.2 NC_001650.1 + 23157 1.12 0.002153
Target:  5'- cGGUUCCUGGGGGUGUUCACCACCGUCa -3'
miRNA:   3'- -CCAAGGACCCCCACAAGUGGUGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.