miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3601 3' -54.2 NC_001650.1 + 121402 0.66 0.974605
Target:  5'- cGGGGGCgccgCCUCGCG-CCUCAagc-ACCu -3'
miRNA:   3'- -CCUCUG----GGGGCGCaGGAGUguuuUGG- -5'
3601 3' -54.2 NC_001650.1 + 76978 0.66 0.981258
Target:  5'- cGAGGCCUCCGUGUUgUUgguguagGCGGGGuCCa -3'
miRNA:   3'- cCUCUGGGGGCGCAGgAG-------UGUUUU-GG- -5'
3601 3' -54.2 NC_001650.1 + 28524 0.66 0.981461
Target:  5'- gGGGGGagUuuGUGUCCU-GCAAGACCc -3'
miRNA:   3'- -CCUCUggGggCGCAGGAgUGUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 155804 0.66 0.980216
Target:  5'- gGGGGACCuguagagggucagcuCCCcgcccgcgcacGCGUCCUCcaGGGACCc -3'
miRNA:   3'- -CCUCUGG---------------GGG-----------CGCAGGAGugUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 30194 0.66 0.96911
Target:  5'- cGAGGCCCUgGgGgUCCUgAC-GGACCu -3'
miRNA:   3'- cCUCUGGGGgCgC-AGGAgUGuUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 171726 0.66 0.974605
Target:  5'- gGGGGGCCUCCGUGUgUCUgAUAGgcgGACg -3'
miRNA:   3'- -CCUCUGGGGGCGCA-GGAgUGUU---UUGg -5'
3601 3' -54.2 NC_001650.1 + 5019 0.66 0.974605
Target:  5'- gGGGGGCCUCCGUGUgUCUgAUAGgcgGACg -3'
miRNA:   3'- -CCUCUGGGGGCGCA-GGAgUGUU---UUGg -5'
3601 3' -54.2 NC_001650.1 + 73488 0.66 0.979352
Target:  5'- --cGGCCCCC-CGggCCUCAgcCAcgGCCa -3'
miRNA:   3'- ccuCUGGGGGcGCa-GGAGU--GUuuUGG- -5'
3601 3' -54.2 NC_001650.1 + 77052 0.66 0.977068
Target:  5'- cGGGGGagCCCGUGUCCacgcggCACAggucAAACUg -3'
miRNA:   3'- -CCUCUggGGGCGCAGGa-----GUGU----UUUGG- -5'
3601 3' -54.2 NC_001650.1 + 48272 0.66 0.977068
Target:  5'- cGGcuaGCCCCCuaG-CC-CACAGGGCCa -3'
miRNA:   3'- -CCuc-UGGGGGcgCaGGaGUGUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 50562 0.66 0.96911
Target:  5'- uGGAGugCCCgCGCaacCCgguCAGGGCCg -3'
miRNA:   3'- -CCUCugGGG-GCGca-GGaguGUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 78959 0.66 0.97683
Target:  5'- uGGGGGCgcagaugCCCCGCGgCC-CAgAGAGCg -3'
miRNA:   3'- -CCUCUG-------GGGGCGCaGGaGUgUUUUGg -5'
3601 3' -54.2 NC_001650.1 + 75061 0.66 0.96911
Target:  5'- cGGGACCgccuggCUCGCGUCCU---GAGACCc -3'
miRNA:   3'- cCUCUGG------GGGCGCAGGAgugUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 166133 0.66 0.974605
Target:  5'- aGGGGCCCacaggCCGCGgguggCaCUCugGAGAUCu -3'
miRNA:   3'- cCUCUGGG-----GGCGCa----G-GAGugUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 28350 0.66 0.974605
Target:  5'- aGGAGAaCCCCGCGgugggggUCUCGC----CCg -3'
miRNA:   3'- -CCUCUgGGGGCGCa------GGAGUGuuuuGG- -5'
3601 3' -54.2 NC_001650.1 + 31668 0.66 0.971954
Target:  5'- cGGGGCCCCU--GUCCcUGCAGAACUc -3'
miRNA:   3'- cCUCUGGGGGcgCAGGaGUGUUUUGG- -5'
3601 3' -54.2 NC_001650.1 + 28424 0.66 0.981461
Target:  5'- -aAGaACUCCUGCauagacaaggggGUCCUCACGGGcACCg -3'
miRNA:   3'- ccUC-UGGGGGCG------------CAGGAGUGUUU-UGG- -5'
3601 3' -54.2 NC_001650.1 + 30932 0.66 0.981258
Target:  5'- cGGGGucguggcACCgCCCGCGcgacguccUCCUCccACAugGCCa -3'
miRNA:   3'- -CCUC-------UGG-GGGCGC--------AGGAG--UGUuuUGG- -5'
3601 3' -54.2 NC_001650.1 + 49796 0.66 0.981461
Target:  5'- cGAGuccACCUCCGCccCCaUCACAgAGACCa -3'
miRNA:   3'- cCUC---UGGGGGCGcaGG-AGUGU-UUUGG- -5'
3601 3' -54.2 NC_001650.1 + 141059 0.66 0.96911
Target:  5'- cGAGAcccuggaaaucCCCCCGUGa-CUCACgGAGACCc -3'
miRNA:   3'- cCUCU-----------GGGGGCGCagGAGUG-UUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.