miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3601 5' -56.5 NC_001650.1 + 183591 0.66 0.936198
Target:  5'- gGGGUCAGccauauuGGUAGGGAgC-CCCCu -3'
miRNA:   3'- gCCCAGUCcuc----CCAUUUCUgGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 111558 0.66 0.913631
Target:  5'- uGGGcucaaacuuggcccUCAGGAuGGgcAGGGCCUCCa- -3'
miRNA:   3'- gCCC--------------AGUCCUcCCauUUCUGGAGGgg -5'
3601 5' -56.5 NC_001650.1 + 56860 0.66 0.936198
Target:  5'- uGGcuacugcgCGGGGGGGUcagcuaGGAGGCCUCuuaCCCg -3'
miRNA:   3'- gCCca------GUCCUCCCA------UUUCUGGAG---GGG- -5'
3601 5' -56.5 NC_001650.1 + 88631 0.66 0.926224
Target:  5'- aGGGUCuc--GGGUAGuacucccCCUCCCCg -3'
miRNA:   3'- gCCCAGuccuCCCAUUucu----GGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 27783 0.66 0.931324
Target:  5'- cCGGGa-AGGAGGGc--AGGCCguUCUCCu -3'
miRNA:   3'- -GCCCagUCCUCCCauuUCUGG--AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 55554 0.66 0.920896
Target:  5'- gCGGGUaCGGccGAGGGgaaaaAAGGGCgUCCUCc -3'
miRNA:   3'- -GCCCA-GUC--CUCCCa----UUUCUGgAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 61430 0.66 0.920896
Target:  5'- gGGGaCGGGcgGGGGUcAGGcaACCcCCCCa -3'
miRNA:   3'- gCCCaGUCC--UCCCAuUUC--UGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 48572 0.66 0.931324
Target:  5'- uGGuGUUgAGGAucuugaccaGGGUGAGGGCCgugCCCa -3'
miRNA:   3'- gCC-CAG-UCCU---------CCCAUUUCUGGa--GGGg -5'
3601 5' -56.5 NC_001650.1 + 16884 0.66 0.936198
Target:  5'- gGGGUCAGccauauuGGUAGGGAgC-CCCCu -3'
miRNA:   3'- gCCCAGUCcuc----CCAUUUCUgGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 50527 0.66 0.915341
Target:  5'- gGGGcCGGGAGGGacGAGGCgcgcuuugggcgCUCgCCg -3'
miRNA:   3'- gCCCaGUCCUCCCauUUCUG------------GAGgGG- -5'
3601 5' -56.5 NC_001650.1 + 117147 0.67 0.8815
Target:  5'- cCGuGGUacuuUAGGAGGGgcacgucagagggGGAGACCcUCUCCa -3'
miRNA:   3'- -GC-CCA----GUCCUCCCa------------UUUCUGG-AGGGG- -5'
3601 5' -56.5 NC_001650.1 + 126782 0.67 0.903557
Target:  5'- gGGGggaGGGAuGGGgcGAcGACaCUCUCCg -3'
miRNA:   3'- gCCCag-UCCU-CCCauUU-CUG-GAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 21785 0.67 0.890885
Target:  5'- gGGGgacgCcgGGGAGGGcGccGGCCgaggCCCCg -3'
miRNA:   3'- gCCCa---G--UCCUCCCaUuuCUGGa---GGGG- -5'
3601 5' -56.5 NC_001650.1 + 184157 0.67 0.907783
Target:  5'- gGGGUUuguGGGgcugccugggaugaGGGGUAAguGGGCCacgCCCCc -3'
miRNA:   3'- gCCCAG---UCC--------------UCCCAUU--UCUGGa--GGGG- -5'
3601 5' -56.5 NC_001650.1 + 169474 0.67 0.896696
Target:  5'- gGGGUCAuGGGGGaGUGcccauaaAGGGCUgugcgacgCCCCc -3'
miRNA:   3'- gCCCAGU-CCUCC-CAU-------UUCUGGa-------GGGG- -5'
3601 5' -56.5 NC_001650.1 + 124103 0.67 0.897331
Target:  5'- aCGGGggcGGAGcGUGcauccGAGAgCUCCCCa -3'
miRNA:   3'- -GCCCaguCCUCcCAU-----UUCUgGAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 22256 0.67 0.908971
Target:  5'- gGGGUgguguacCAGGuGGGc-GGGAUCUCCaCCg -3'
miRNA:   3'- gCCCA-------GUCCuCCCauUUCUGGAGG-GG- -5'
3601 5' -56.5 NC_001650.1 + 88714 0.67 0.890885
Target:  5'- gCGGGggCGGGAGGGggcuccucGGGGAag-CCCCc -3'
miRNA:   3'- -GCCCa-GUCCUCCCa-------UUUCUggaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 145768 0.67 0.903557
Target:  5'- cCGGGUucCAGGc-GGUGAGGacgaGCCUCCUg -3'
miRNA:   3'- -GCCCA--GUCCucCCAUUUC----UGGAGGGg -5'
3601 5' -56.5 NC_001650.1 + 17450 0.67 0.907783
Target:  5'- gGGGUUuguGGGgcugccugggaugaGGGGUAAguGGGCCacgCCCCc -3'
miRNA:   3'- gCCCAG---UCC--------------UCCCAUU--UCUGGa--GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.