miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3601 5' -56.5 NC_001650.1 + 55554 0.66 0.920896
Target:  5'- gCGGGUaCGGccGAGGGgaaaaAAGGGCgUCCUCc -3'
miRNA:   3'- -GCCCA-GUC--CUCCCa----UUUCUGgAGGGG- -5'
3601 5' -56.5 NC_001650.1 + 171500 0.66 0.920896
Target:  5'- cCGGGgCucGAGGGgu-AGGCCUCCg- -3'
miRNA:   3'- -GCCCaGucCUCCCauuUCUGGAGGgg -5'
3601 5' -56.5 NC_001650.1 + 156514 0.66 0.920896
Target:  5'- gGGaGUCAGGcccgGGGGgcGAGugUgagggacCCCCg -3'
miRNA:   3'- gCC-CAGUCC----UCCCauUUCugGa------GGGG- -5'
3601 5' -56.5 NC_001650.1 + 61430 0.66 0.920896
Target:  5'- gGGGaCGGGcgGGGGUcAGGcaACCcCCCCa -3'
miRNA:   3'- gCCCaGUCC--UCCCAuUUC--UGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 4793 0.66 0.920896
Target:  5'- cCGGGgCucGAGGGgu-AGGCCUCCg- -3'
miRNA:   3'- -GCCCaGucCUCCCauuUCUGGAGGgg -5'
3601 5' -56.5 NC_001650.1 + 29416 0.66 0.91759
Target:  5'- gGGGUCaggAGGAGGGUGcagcAgauucugagcgacggGGACaacCCCCa -3'
miRNA:   3'- gCCCAG---UCCUCCCAU----U---------------UCUGga-GGGG- -5'
3601 5' -56.5 NC_001650.1 + 88616 0.66 0.915341
Target:  5'- -cGGcCAGGGGGGUcuacuCCUgCCCCg -3'
miRNA:   3'- gcCCaGUCCUCCCAuuucuGGA-GGGG- -5'
3601 5' -56.5 NC_001650.1 + 31386 0.66 0.915341
Target:  5'- aCGGGcUCAGGAGGcUGAcAGACUgcauagagaCCCa -3'
miRNA:   3'- -GCCC-AGUCCUCCcAUU-UCUGGag-------GGG- -5'
3601 5' -56.5 NC_001650.1 + 50527 0.66 0.915341
Target:  5'- gGGGcCGGGAGGGacGAGGCgcgcuuugggcgCUCgCCg -3'
miRNA:   3'- gCCCaGUCCUCCCauUUCUG------------GAGgGG- -5'
3601 5' -56.5 NC_001650.1 + 111558 0.66 0.913631
Target:  5'- uGGGcucaaacuuggcccUCAGGAuGGgcAGGGCCUCCa- -3'
miRNA:   3'- gCCC--------------AGUCCUcCCauUUCUGGAGGgg -5'
3601 5' -56.5 NC_001650.1 + 111150 0.67 0.909561
Target:  5'- cCGGGcccucUCAgGGAGGGUGuGAGGCgggUCCCa -3'
miRNA:   3'- -GCCC-----AGU-CCUCCCAU-UUCUGga-GGGG- -5'
3601 5' -56.5 NC_001650.1 + 183856 0.67 0.909561
Target:  5'- gGGGUCAGccauauuGGUAGGGAgC-CCCCa -3'
miRNA:   3'- gCCCAGUCcuc----CCAUUUCUgGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 91606 0.67 0.909561
Target:  5'- aGGGUgucuguggugagCAGGcuGGaGGUGAugcuGACCUCgCCCa -3'
miRNA:   3'- gCCCA------------GUCC--UC-CCAUUu---CUGGAG-GGG- -5'
3601 5' -56.5 NC_001650.1 + 50886 0.67 0.909561
Target:  5'- aGGGUCAcGGGcagcaGGUAGaaggucAGGCC-CCCCg -3'
miRNA:   3'- gCCCAGU-CCUc----CCAUU------UCUGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 17149 0.67 0.909561
Target:  5'- gGGGUCAGccauauuGGUAGGGAgC-CCCCa -3'
miRNA:   3'- gCCCAGUCcuc----CCAUUUCUgGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 109582 0.67 0.909561
Target:  5'- aGGGgaacgccCGGGAGGGggucuccgagGAAG-CC-CCCCa -3'
miRNA:   3'- gCCCa------GUCCUCCCa---------UUUCuGGaGGGG- -5'
3601 5' -56.5 NC_001650.1 + 22256 0.67 0.908971
Target:  5'- gGGGUgguguacCAGGuGGGc-GGGAUCUCCaCCg -3'
miRNA:   3'- gCCCA-------GUCCuCCCauUUCUGGAGG-GG- -5'
3601 5' -56.5 NC_001650.1 + 17450 0.67 0.907783
Target:  5'- gGGGUUuguGGGgcugccugggaugaGGGGUAAguGGGCCacgCCCCc -3'
miRNA:   3'- gCCCAG---UCC--------------UCCCAUU--UCUGGa--GGGG- -5'
3601 5' -56.5 NC_001650.1 + 184157 0.67 0.907783
Target:  5'- gGGGUUuguGGGgcugccugggaugaGGGGUAAguGGGCCacgCCCCc -3'
miRNA:   3'- gCCCAG---UCC--------------UCCCAUU--UCUGGa--GGGG- -5'
3601 5' -56.5 NC_001650.1 + 115242 0.67 0.903557
Target:  5'- -aGGUCAGcGAGGcccccuUGAccGCCUCCCCa -3'
miRNA:   3'- gcCCAGUC-CUCCc-----AUUucUGGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.