miRNA display CGI


Results 61 - 80 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 108846 0.67 0.809742
Target:  5'- cAGGCGcGAGGCCGGguggucGGCCAggauguCAGAGaGCa -3'
miRNA:   3'- -UCCGC-UUCCGGCU------CCGGU------GUUUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 88416 0.67 0.82672
Target:  5'- gAGGCcucGccGGCCGAGGCgGgCAAGgcGGACc -3'
miRNA:   3'- -UCCG---CuuCCGGCUCCGgU-GUUU--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 129465 0.67 0.82672
Target:  5'- uGGCGgcGGagCG-GGCCACcAGGGAg -3'
miRNA:   3'- uCCGCuuCCg-GCuCCGGUGuUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 129975 0.67 0.809742
Target:  5'- aAGGCG-GGGCCGuuGGGaaGCAu-GGACa -3'
miRNA:   3'- -UCCGCuUCCGGC--UCCggUGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 35900 0.67 0.801014
Target:  5'- cGGGCGGAcuGGCCG-GGCUACAAc---- -3'
miRNA:   3'- -UCCGCUU--CCGGCuCCGGUGUUuccug -5'
3602 3' -57.8 NC_001650.1 + 131565 0.67 0.817463
Target:  5'- gGGGCGGagaaaccccgAGGCCGAGGuccugcccgugacCCACcgccaguGGGCg -3'
miRNA:   3'- -UCCGCU----------UCCGGCUCC-------------GGUGuuu----CCUG- -5'
3602 3' -57.8 NC_001650.1 + 84963 0.67 0.818313
Target:  5'- cGGCGAAGG-UGAGGa---GGAGGGCg -3'
miRNA:   3'- uCCGCUUCCgGCUCCggugUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 27904 0.67 0.82672
Target:  5'- cGGgGguGGCgGGGGCCuACAAcgaccuGGACa -3'
miRNA:   3'- uCCgCuuCCGgCUCCGG-UGUUu-----CCUG- -5'
3602 3' -57.8 NC_001650.1 + 30992 0.67 0.804523
Target:  5'- gAGGCGcggaugcacaggagcAGGGCCu-GGCUgggGCGGGGGGCg -3'
miRNA:   3'- -UCCGC---------------UUCCGGcuCCGG---UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150984 0.67 0.82672
Target:  5'- uGGCGgcGGUgGuGGCgGCGGAGGu- -3'
miRNA:   3'- uCCGCuuCCGgCuCCGgUGUUUCCug -5'
3602 3' -57.8 NC_001650.1 + 37005 0.67 0.82672
Target:  5'- aAGGCcaucAGGCgCGAgcuGGCCACGGucucGGACg -3'
miRNA:   3'- -UCCGcu--UCCG-GCU---CCGGUGUUu---CCUG- -5'
3602 3' -57.8 NC_001650.1 + 107858 0.67 0.82672
Target:  5'- gGGGCGggGGCgaGGGGgCGCAcgccGACc -3'
miRNA:   3'- -UCCGCuuCCGg-CUCCgGUGUuuc-CUG- -5'
3602 3' -57.8 NC_001650.1 + 129724 0.67 0.801014
Target:  5'- -aGUGGAGGCCGAGGU-----GGGGCu -3'
miRNA:   3'- ucCGCUUCCGGCUCCGguguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129068 0.67 0.817463
Target:  5'- -cGCGAccccgccAGGCUGGacguGGCCGCGAcGGGCu -3'
miRNA:   3'- ucCGCU-------UCCGGCU----CCGGUGUUuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 46509 0.67 0.792138
Target:  5'- cGGCGucgGGGCCGGcGGCgACc--GGGCg -3'
miRNA:   3'- uCCGCu--UCCGGCU-CCGgUGuuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 92589 0.67 0.792138
Target:  5'- cAGGacugGAAGGUgGAGGCCuuGAAGGcCc -3'
miRNA:   3'- -UCCg---CUUCCGgCUCCGGugUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 125112 0.67 0.783122
Target:  5'- cAGGCGGucagcGGcCCGAacaGCCagGCAGAGGGCg -3'
miRNA:   3'- -UCCGCUu----CC-GGCUc--CGG--UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 155037 0.67 0.783122
Target:  5'- gGGGUGGuaggcGGCCGAggGGUCGCAGAGcaGGCc -3'
miRNA:   3'- -UCCGCUu----CCGGCU--CCGGUGUUUC--CUG- -5'
3602 3' -57.8 NC_001650.1 + 61425 0.67 0.818313
Target:  5'- cGGGCGggGGUC-AGGCaaccccccCACAucgcccggucAGGGGCa -3'
miRNA:   3'- -UCCGCuuCCGGcUCCG--------GUGU----------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 106580 0.67 0.818313
Target:  5'- uGGCac-GGCa-GGGUCACGAGGGACc -3'
miRNA:   3'- uCCGcuuCCGgcUCCGGUGUUUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.